Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15946g00001 ATGTCGCAAACTAATCTATCTGAGGAAAGTGTAGAAAAGCTACCTTTTGGCGCAGAACAAGGGATTGCTGGTGTATTGAAAGGTTCCAATGAATCCTTTCATTATAATCCCCAATCATGGTCTGACGTGTTTAGGCAGTCAGCACCTACCTCGTATCGTCTAGTTGGGAATAAGCTTGTCGCGATCGATGCTGTTCCCCACGAAAGTAGTCTATTCTCGAGCTCACTTTCTGATATGTTTAGCCAGAAATTGAATCTATTGGCGAATAATCTTCTGTCCAATCAGCAGACTGCTGCCGGTTCCCTTCTGGAGGAAGATCCGTATAAATCTCTTGAAGAGATGGAGTCTGACTATATACATAATCTCCTTCCTGATGAAGATGACCTATTTTCTGGTGTTGCTGATGAGTTAGAAAACAATTCTTATGCTAGGATTAAAGATGACTCGGAAGATTTGGATTTGTTTAGTAGCGGCGGAGGCATGGAGCTGGAAGGAGATGAACGTTTAAGTTCGCTGAAAAGAACAAGTGGTTTGGATGGAGATCACGGTTTCTTTGGAGGTTCTAAAGGAAAATTTCCTTTTGTTGAACAGCCTTCTAGGACACTTTTTGTTAGAAATATTAATAGCAGCGTTGAAGACATTGAGCTAAAGTCTCTATTTGAGCAATATGGCGATATCCGAACCATGTATACAGCTTGCAAGCATCGTGGGTTTGTGATGATTTCTTATTTTGATATAAGGGCAGCACAGAAAGCAATGCAAACACTGCAAAGCAGGCCATTGAGGTCTAGGAAACTAGACATACATTATTCGATTCCAAAGGTCAATGCTCCAGAGAAGGATATTGGTCATGGTACGCTGATGTTATCTGGTCTTGATTCATCTGTTTTAAATGATGAGCTTATACATTATTTTGGATCTATGAATATCCCGGAATGA 939 0.4058 MSQTNLSEESVEKLPFGAEQGIAGVLKGSNESFHYNPQSWSDVFRQSAPTSYRLVGNKLVAIDAVPHESSLFSSSLSDMFSQKLNLLANNLLSNQQTAAGSLLEEDPYKSLEEMESDYIHNLLPDEDDLFSGVADELENNSYARIKDDSEDLDLFSSGGGMELEGDERLSSLKRTSGLDGDHGFFGGSKGKFPFVEQPSRTLFVRNINSSVEDIELKSLFEQYGDIRTMYTACKHRGFVMISYFDIRAAQKAMQTLQSRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVLNDELIHYFGSMNIPE 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15946g00001 312 CDD RRM1_MEI2_like 199 274 IPR034453 -
Trme15946g00001 312 Gene3D - 194 285 IPR012677 -
Trme15946g00001 312 SUPERFAMILY RNA-binding domain, RBD 197 307 IPR035979 GO:0003676
Trme15946g00001 312 SMART rrm1_1 201 269 IPR000504 GO:0003723
Trme15946g00001 312 FunFam MEI2-like protein 5 isoform 2 189 283 - -
Trme15946g00001 312 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Trme15946g00001 312 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 266 IPR000504 GO:0003723
Trme15946g00001 312 PANTHER RNA RECOGNITION MOTIF-CONTAINING 58 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15946g00001 Trme-Chr15946 14 1446 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15946g00001 197 307 Eukaryotic Initiation Factors Gene Family AT1G71770 26.724 6.21e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15946g00001 - - aprc:113865455 379.407