Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme159340g00001 ATGCTCGACCGCTACGTCTTGAGCAGCAAAATTCAGAGCGCACTCGGCTACATGGCACCAGAATTCGCCTGCAAAACAGTGAAAATCACCGAAAAATGCGATGTTTATGGATTCGGAGTTTTGGTTTTGGAGATTGTGACAGGTAAAAGGCCAGTAGAGTACATGGAGGATGACGTGGTTGTACTTTGTGACATGGTTAGAGGAGCATTGGATGAAGGGAGAGTAGAGGAATGCATTGATGAGAGGCTTCTAGGGAAGTTTCCAGTAGAGGAAGTGATTCCTGTGATTAAGCTTGGTTTGGTATGTACTTCACAAGTACCATCTAATAGGCCAGAAATGGGAGAGGTAGTTACCATATTGGAACTTATAAGATGCCCCTCAGGTTCAGATGGACAAGAAGAGTTATTGGGATGA 414 0.4444 MLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEIVTGKRPVEYMEDDVVVLCDMVRGALDEGRVEECIDERLLGKFPVEEVIPVIKLGLVCTSQVPSNRPEMGEVVTILELIRCPSGSDGQEELLG 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme159340g00001 137 Pfam Protein tyrosine and serine/threonine kinase 4 117 IPR001245 GO:0004672|GO:0006468
Trme159340g00001 137 Gene3D Transferase(Phosphotransferase) domain 1 3 132 - -
Trme159340g00001 137 ProSiteProfiles Protein kinase domain profile. 1 123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme159340g00001 137 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 7 121 - -
Trme159340g00001 137 SUPERFAMILY Protein kinase-like (PK-like) 14 118 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme159340g00001 Trme-Chr159340 48 461 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme159340g00001 1 132 Receptor kinase-like Gene Family AT3G56370 82.576 6.29e-75 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Trme159340g00001 PK_Tyr_Ser-Thr 1.4e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme159340g00001 - - mtr:25489825 266.929