Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme159202g00001 ATGATCCAACATAGGCCTTACACAAAGAAAGTGGATGTATATAGCTTTGGGATTGTCCTGTGGGAGCTGATCATTGGTATGCTTCCATTTCAGAACATGACAGCAGTACAGGCAGCATTTGCAGTTGTCAACAGAAATGTTCGCCCGATCTTGCCCAATGATTGTTTGYCTGTTCTCCGTGAGATCATGACAAGGTGTTGGGATCCCAACCCTGATGTCAGGCCACCCTTCATTGAAATTGTTGCAATGCTTAATGTCGAGATCGAGGTCATATGA 276 0.4457 MIQHRPYTKKVDVYSFGIVLWELIIGMLPFQNMTAVQAAFAVVNRNVRPILPNDCLXVLREIMTRCWDPNPDVRPPFIEIVAMLNVEIEVI 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme159202g00001 91 Pfam Protein tyrosine and serine/threonine kinase 2 84 IPR001245 GO:0004672|GO:0006468
Trme159202g00001 91 PANTHER SERINE-THREONINE PROTEIN KINASE 4 85 - -
Trme159202g00001 91 ProSiteProfiles Protein kinase domain profile. 1 88 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme159202g00001 91 SUPERFAMILY Protein kinase-like (PK-like) 2 84 IPR011009 -
Trme159202g00001 91 Gene3D Transferase(Phosphotransferase) domain 1 1 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme159202g00001 Trme-Chr159202 170 445 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme159202g00001 1 91 MAP Kinase Kinase Kinase AT2G24360 73.913 3.24e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trme159202g00001 PK_Tyr_Ser-Thr 1.7e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme159202g00001 - - gmx:100802077 167.933