Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme159193g00001 ATGGATAGGAAGGGATTTGAGGTGAAATTTGGGTATGGTTTAAGATCAAGGTCACAGTCACACTGTGATGTTAGTGTTACCCATGGTTCTTTGGTGGTTGATGGCATGAAGCAGAGTTGTTGGGCTAACATGCCCCCTGAGCTTTTGAGGGATGTGCTTATGAGAATTGAAGTGTCAGATGATACTTGGCCTGCCCGCAAAAATGTTGTTGCTTGCGCCGGTGTTTGTAGGAGTTGGAGAGAAATTGTGAAGGAAATTGTCAAACCTCCTCAACAATCCAGCAAGTTGACATTCCCTATCTCCTTGAAGCAGCCTCTTGAATTAAGCTCAAAGAACTTTGTGATTGACTAG 351 0.4387 MDRKGFEVKFGYGLRSRSQSHCDVSVTHGSLVVDGMKQSCWANMPPELLRDVLMRIEVSDDTWPARKNVVACAGVCRSWREIVKEIVKPPQQSSKLTFPISLKQPLELSSKNFVID 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme159193g00001 116 Pfam F-box domain 41 87 IPR001810 GO:0005515
Trme159193g00001 116 CDD F-box_AtTLP-like 41 85 - -
Trme159193g00001 116 PANTHER TUBBY-RELATED 35 106 - -
Trme159193g00001 116 SUPERFAMILY F-box domain 33 84 IPR036047 GO:0005515
Trme159193g00001 116 Gene3D - 34 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme159193g00001 Trme-Chr159193 28 458 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme159193g00001 1 105 TUB Transcription Factor Family AT2G47900 73.333 3.11e-47 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme159193g00001 K19600 - gmx:100809257 174.866