Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15915g00001 ATGGAAACTACTGGGTTAAGTCATAGAATTGAACTTCAAAATAACTTTGATCTGTTTTTTGCAGTTGCTGCTGTTGCTGATGGCTTGAAGGCATGGGAAATAATGAAGGGAAGACCGCGCAATTTCGATCTAATACTTACAGAAGTCGATTTGCCATCCATATCTGGCTATGCACTTCTCACATTAATTATGGAGCATGATATTTGCAAAAACATCCCTGTCATAATGATGTCGTCTCAAGATTCAGTTAGCACAGTATACAAATGCATGTGTAGAGGTGCAGCTGACTATCTCGTTAAACCGATTCGAATAAATGAACTGAGGAATTTGTGGCAGCATGTTTGGAGAAGACAATCACAGTTAACCGCARACGCTGGCATAAATGGTCCCCAAGATGAAACCGATGAACARCAGAAAGTTGAAGCCACTGCTGAAAACAACGCTGCTGGTTATCGTTCTAGTGGCGAAGCTGCTTGCATTCAAATAAATAAGGACTTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTACAAAGCCAAACATGGAAGCTGAGAGTGGCCTGGTTGATAACATGCAGGAATTTTCTCAGCTGAAATGTGCTGACGCATATCCAAGTGAAACAAAGACACAAGATGTTGACATTCATTTAGGCCAGGCATTGATCACGCAGGACAGTCGCGCTGGAG 688 0.4186 METTGLSHRIELQNNFDLFFAVAAVADGLKAWEIMKGRPRNFDLILTEVDLPSISGYALLTLIMEHDICKNIPVIMMSSQDSVSTVYKCMCRGAADYLVKPIRINELRNLWQHVWRRQSQLTABAGINGPQDETDEQQKVEATAENNAAGYRSSGEAACIQINKDLIEKGSDAQSSCTKPNMEAESGLVDNMQEFSQLKCADAYPSETKTQDVDIHLGQALITQDSRAG 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15915g00001 229 MobiDBLite consensus disorder prediction 125 147 - -
Trme15915g00001 229 Pfam Response regulator receiver domain 21 109 IPR001789 GO:0000160
Trme15915g00001 229 SMART REC_2 1 111 IPR001789 GO:0000160
Trme15915g00001 229 Gene3D - 8 223 - -
Trme15915g00001 229 ProSiteProfiles Response regulatory domain profile. 1 115 IPR001789 GO:0000160
Trme15915g00001 229 SUPERFAMILY CheY-like 19 141 IPR011006 -
Trme15915g00001 229 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 184 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15915g00001 Trme-Chr15915 124 1110 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15915g00001 20 209 Response Regulator Gene Family AT5G24470 59.686 2.93e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme15915g00001 Response_reg 2e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15915g00001 K12130 - gmx:100777119 319.701