Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15888g00001 ATGAAAGAAATGGATGACAATGAGTCTCTTCAGCTTTTTAGTTGGCACGCCTTTAAGCAACCAATTCCTGTAGAAGGTTTTGCTGACCTTTCTAGAGATGTTGTTCAGTACTCTGGTGGATTGCCACTAGCTCTTCAAGTCATTGGGTCCTTTTTGTTGACTAGGCGAAGAAAAAAAGNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNATGAAGTGTTAGAGAAGCTCAGAATTAGTTTTGATGGTTTACGTGATGATGATATGAAAGAAATATTCCTTGACATTGCCTTTTTCTTTATTGGGATGGACCAGGAAGATGTAATTACAATATTGGAAGACTGTGGGCATCATGCATATAATGGAATAAGTGATCTTGTACGACAAAGCCTTATAACTGTTGATCGGAAGAACAAGATTGGAATGCATGATTTGCTACGTGACATGGGAAGAGAGATTGTACGTAAGAAATCAACAGAGGGARGCAAGGAGCCTAGTAGGTTATGGCATTACGAGGATGTTAAGTATGTGTTGTCAAAAGATACCAGAACTTTAGATGTTAAGGGACTGACTTTAAAGATGTCAAGATTGGACTCCACAACTTTTTTGGAAACTAAATCTCTTGAGAAGATGGATAAGCTGAGATATCTTCAGCTTGCTGGCGTACAACTTGATGGAAATTACAAATATCTTTCAAGAGATATCCGATGGCTTTGTTGGCATGGATTCCCTTTAAAATATACACCACCCGAATTTCATCAAGAACGTTTAGTTGCTGTTGACTTAAAATATTCCAATCTGAAACACGTGTGGAAGAAGTCCCAG 834 0.3633 MKEMDDNESLQLFSWHAFKQPIPVEGFADLSRDVVQYSGGLPLALQVIGSFLLTRRRKKXXXXXXXXXXXXXXXEVLEKLRISFDGLRDDDMKEIFLDIAFFFIGMDQEDVITILEDCGHHAYNGISDLVRQSLITVDRKNKIGMHDLLRDMGREIVRKKSTEGXKEPSRLWHYEDVKYVLSKDTRTLDVKGLTLKMSRLDSTTFLETKSLEKMDKLRYLQLAGVQLDGNYKYLSRDIRWLCWHGFPLKYTPPEFHQERLVAVDLKYSNLKHVWKKSQ 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15888g00001 278 Coils Coil 75 80 - -
Trme15888g00001 278 SUPERFAMILY "Winged helix" DNA-binding domain 75 181 IPR036390 -
Trme15888g00001 278 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 273 IPR044974 GO:0006952
Trme15888g00001 278 Gene3D - 3 88 IPR042197 -
Trme15888g00001 278 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 99 IPR027417 -
Trme15888g00001 278 Coils Coil 55 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15888g00001 Trme-Chr15888 440 1368 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15888g00001 4 274 WRKY Transcription Factor Family AT5G45050 29.693 1.41e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15888g00001 - - tpra:123891787 468.774