Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme158870g00001 AGAGAATGTAACATCTATGGCACAGTCGATTTCATCTTTGGTAACGCCGCTGTAGTGTTGCAAAGTTGCAACATTATTGCAAGAAACCCACCTCAAAAAACAATCACACTTACCGCTCAAGGACGAACTGATCCAAACCAAAACACCGGAATCATAATTCACAATTCTCAAGTCACAGCCGCATCGGATTTAAACCCTAGTTCCGTTAAATCATATCTCGGCCGACCTTGGCAAAAATATTCAAGAACAGTTTTCATGAAAACTTCAATTGGTGGTTTTATTAACCCTGCTGGTTGGTTACCATGGGATGGTAATTTTGCTTTGGATACTTTATATTATGCTGAATATGCTAATACTGGCTCAGGTGCATCCACTTCAAATAGGGTTACATGGAAAGGTTACCATGTTCTTACTAGTGCATCTCAAGCTACACCATTCACCGTTGGAAATTTTATTGCTGGTAGTTCATGGTTACCTAACACGGGCGTGCCTTTCACCGCCGGACTTTAA 510 0.4098 RECNIYGTVDFIFGNAAVVLQSCNIIARNPPQKTITLTAQGRTDPNQNTGIIIHNSQVTAASDLNPSSVKSYLGRPWQKYSRTVFMKTSIGGFINPAGWLPWDGNFALDTLYYAEYANTGSGASTSNRVTWKGYHVLTSASQATPFTVGNFIAGSSWLPNTGVPFTAGL 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme158870g00001 169 PANTHER PECTINESTERASE 1 159 - -
Trme158870g00001 169 Pfam Pectinesterase 1 154 IPR000070 GO:0030599|GO:0042545
Trme158870g00001 169 SUPERFAMILY Pectin lyase-like 1 168 IPR011050 -
Trme158870g00001 169 ProSitePatterns Pectinesterase signature 2. 5 14 IPR033131 -
Trme158870g00001 169 Gene3D - 1 169 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme158870g00001 Trme-Chr158870 1 510 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme158870g00001 1 169 Carbohydrate Esterase AT2G45220 71.345 9.84e-85 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme158870g00001 K01051 - gmx:100794948 305.834