Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme158867g00001 GATGAACTTCTTCGCACGGCATGCGGAACACCGAATTACGTTGCTCCTGAGGTGCTTAATGATAGAGGTTATGTTGGTTCTACATCTGATATCTGGTCTTGTGGMGTCATTCTCTTTGTACTTATGGCTGGCTACTTGCCGTTCGATGAGCCGAATCAAATGACACTTTTTAAGAAAATTGGTAGGGCTGAGTTCACATTTCCGCCTTGGTTTTCCGCTGAGGCAAAGAAACTGCTCAATGCTATACTTAACCCGGACCCTCTAACG 267 0.4532 DELLRTACGTPNYVAPEVLNDRGYVGSTSDIWSCGVILFVLMAGYLPFDEPNQMTLFKKIGRAEFTFPPWFSAEAKKLLNAILNPDPLT 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme158867g00001 89 Gene3D Transferase(Phosphotransferase) domain 1 1 89 - -
Trme158867g00001 89 SUPERFAMILY Protein kinase-like (PK-like) 3 87 IPR011009 -
Trme158867g00001 89 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 1 88 - -
Trme158867g00001 89 ProSiteProfiles Protein kinase domain profile. 1 89 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme158867g00001 89 Pfam Protein kinase domain 4 87 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme158867g00001 Trme-Chr158867 53 508 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme158867g00001 1 89 CBL-interacting serine-threonine protein kinases AT1G01140 70.787 8.47e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trme158867g00001 Pkinase 3.9e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme158867g00001 - - gmx:100794136 164.466