Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme158829g00001 CAGCAACCAGATCCATTGCAGAAGCCAAGAAAAGATCGTTACGCTCTTGTAACTTCTCCTCAGTGGCTTGGTCCACAGATTGAAGTTATCCGGTTTTCGACCAAATCGATTGAAAGGGAGATAAATTCAGTGAATGACAATCCTCTGATTGATGTCACAAGAGATAAGGCTCTGAATGGTGGTAATTTCCAAGGCACACCAATAGGAGTTTCAATGGATAATGTNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTTGTATAATAATGGGTTGCCATCAAATCTTTCTGCTGGTAGAAACCCAAGTTTGGATTATGGTTTTAAGGCCTCTGAAGTTGCTATGGCTGCTTACTGTTCTGAACTTCAATATTTAGCAAATCCTGTGACAAGCCATGTGCAAAGTGCTGAGCAGCACAACCAAGATGTGAACTCTTTGGGGTTGATTTCTGCTTTGAAAACTGCGGAAGCCATTGAGATATTGAAGCTCATGT 523 0.3633 QQPDPLQKPRKDRYALVTSPQWLGPQIEVIRFSTKSIEREINSVNDNPLIDVTRDKALNGGNFQGTPIGVSMDNVXXXXXXXXXXXXXXXXXXXXXLYNNGLPSNLSAGRNPSLDYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTAEAIEILKLM 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme158829g00001 174 Pfam Aromatic amino acid lyase 7 174 IPR001106 -
Trme158829g00001 174 SUPERFAMILY L-aspartase-like 4 174 IPR008948 GO:0003824
Trme158829g00001 174 Gene3D Fumarase/aspartase (Central domain) 1 174 - -
Trme158829g00001 174 Coils Coil 72 75 - -
Trme158829g00001 174 PANTHER HISTIDINE AMMONIA-LYASE 3 174 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme158829g00001 Trme-Chr158829 1 523 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme158829g00001 1 174 Monolignol Biosynthesis Gene Families AT2G37040 73.563 5.28e-89 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme158829g00001 K10775 - gmx:100787872 293.123