Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme158815g00001 ATGCTTGCAAAACAAACAGGACTTACTAGGAGTCAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGACTTTGGAAGCCAATGGTGGAAGAAATGTACATGGAAGAGATGAAGGAGCAAGAGATGAATGGTTCTGAGGATAACAAATCAAGCAAGAATATTGATGAAGACCCTTCAATGAAATCAACAACTCCACAA 198 0.3889 MLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKEQEMNGSEDNKSSKNIDEDPSMKSTTPQ 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme158815g00001 66 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 50 - -
Trme158815g00001 66 Gene3D - 1 54 - -
Trme158815g00001 66 ProSiteProfiles 'Homeobox' domain profile. 1 27 IPR001356 GO:0003677
Trme158815g00001 66 Pfam Homeobox KN domain 2 23 IPR008422 GO:0003677|GO:0006355
Trme158815g00001 66 CDD homeodomain 2 27 IPR001356 GO:0003677
Trme158815g00001 66 MobiDBLite consensus disorder prediction 36 66 - -
Trme158815g00001 66 SUPERFAMILY Homeodomain-like 1 35 IPR009057 -
Trme158815g00001 66 MobiDBLite consensus disorder prediction 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme158815g00001 Trme-Chr158815 1 286 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme158815g00001 1 48 Homeobox Transcription Factor Family AT4G34610 72.917 5.20e-20 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trme158815g00001 Homeobox_KN 2.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme158815g00001 - - sind:105173990 97.0561