Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15860g00001 TTCCAAGGCACATATGGGAAACCACTTTTAGCTGCAAGAGATCCAAAGTGCTCTGCTAAGGATGCCGAAGCTGGAGCACTTGCTATGGAAGCATTGCATAAGCAGGTCATGCCTTTCCTCCTTCGGAGGACAAAGGATGAAGTCTTGTCCGATCTGCCGGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCTCTGTGCAACTTAAACTTTACGAACAGTTTTCTGGGTCTCGTGCGAAACAAGAGATGTCATCTATTGTAACAANNNNNGAGTCAGCTGCAGCAGAAGGAAGTAGCAGTACTACTAAAGCATCTTCACATGTTTTCCAGGCACTCCAATACTTGCTAAAACTTTGTAGTCATCCATTGCTTGTACTTGGTGGGAAGATTCCAGATTCACTTTCTACCATCCTCTCAGAAGTGTTCCCTGCTGGCTCCGATATCATTTCAGAACTTCACAAACTCCACCACTCCCCAAAATTAGTTGCTCTTCATGAGATTCTTGAAGAGTGTGGAATTGGAGTTGACGCTTCAGGTTCTGAGGCTGCTGTTGGCTTTGGGCAGCATAGGGTCTTAATATTTGCTCAACATAAGGCGTTCTTGGATATAATTGAAAAAGATTTGTTTCAGACACACATGAAAAA 647 0.4281 FQGTYGKPLLAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSSVQLKLYEQFSGSRAKQEMSSIVTXXESAAAEGSSSTTKASSHVFQALQYLLKLCSHPLLVLGGKIPDSLSTILSEVFPAGSDIISELHKLHHSPKLVALHEILEECGIGVDASGSEAAVGFGQHRVLIFAQHKAFLDIIEKDLFQTHMK 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15860g00001 215 Gene3D - 23 52 IPR038718 -
Trme15860g00001 215 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 215 IPR044972 GO:0003677|GO:0016887|GO:0017025
Trme15860g00001 215 Gene3D - 53 212 IPR027417 -
Trme15860g00001 215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 210 IPR027417 -
Trme15860g00001 215 Pfam SNF2-related domain 28 125 IPR000330 GO:0005524|GO:0140658
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme15860g00001 SNF2_N 6.4e-10 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15860g00001 K15192 - gmx:100777977 372.859