Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15856g00001 ATGAAGCAATTCGTTATCAGTTCAGAAACTGATGCAATTAGAGAAGTTGAAGACAGGGGTGACCAAGTGGAAATTGCACGATTTATTAAAGACGAAGTGAAAAGAGAGCTGAAGAAATGCCTTGAGGAAGCACAAAGCTATTTTCACACTGTATCTGGACCAAAATTAGCACTTGTAATTGATGGGAAGTGTCTAATGTATGCATTGGATCCAAGTTTAAGGGTGATGCTACTCAATCTTAGTTTGAATTGTCATGCTGTTGTTTGCTGCCGGGTTTCTCCTTTACAGAAAGCACAGGTGACAAGTATGGTCAAGAAAGGTGCAAAGAAAATAACCCTTAGTATTGGCGATGGAGCCAATGACGTAAGCATGATTCAAGCTGCTCATGTTGGTGTTGGCATAAGTGGAATGGAGGGAATGCAAGCTGTGATGGCTAGTGATTTTGCCATTGCACAGTTCCGTTACCTTGAAGATTTGCTTCTCGTTCATGGCCGATGGTCATATCTGCGAATATGCAAGGTGGTGATATACTTCTTTTACAAGAATCTCACATTTACTCTTACTCAGTTTTGGTTTACTTTTCAAACTGGGTTTTCTGGTCAAAGGTTCTATGATGATTGGTTTCAGTCTCTATATAATGTTATTTTCACGGCACTGCCTGTGATCATTGTTGGACTATTTGACAAG 687 0.4003 MKQFVISSETDAIREVEDRGDQVEIARFIKDEVKRELKKCLEEAQSYFHTVSGPKLALVIDGKCLMYALDPSLRVMLLNLSLNCHAVVCCRVSPLQKAQVTSMVKKGAKKITLSIGDGANDVSMIQAAHVGVGISGMEGMQAVMASDFAIAQFRYLEDLLLVHGRWSYLRICKVVIYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDK 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15856g00001 229 Pfam Phospholipid-translocating P-type ATPase C-terminal 143 229 IPR032630 -
Trme15856g00001 229 NCBIfam HAD-IC family P-type ATPase 88 194 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme15856g00001 229 SUPERFAMILY HAD-like 53 162 IPR036412 -
Trme15856g00001 229 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 229 - -
Trme15856g00001 229 SUPERFAMILY Calcium ATPase, transmembrane domain M 164 227 IPR023298 -
Trme15856g00001 229 Gene3D - 4 155 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15856g00001 Trme-Chr15856 16 1101 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15856g00001 1 229 Primary Pumps ATPases AT1G59820 88.646 1.67e-144 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15856g00001 K14802 - gmx:100815547 424.091