Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1584g00001 ATGAGTAACATTCAGATCCATGTGAAGACCGGTCATGGGAAACCTGCCATCACAATGGAGGTGCAAAATACCGATACCATCATTGGTATCAAGGACAAGATTTTAAAGGAACATGGAATTCCACATGATGAACAACATATAGTATTTTCTGATTCCAGAGCAGACTCCAAATCAGATGATGGCTGGCACCGGAGAATCTAA 201 0.4129 MSNIQIHVKTGHGKPAITMEVQNTDTIIGIKDKILKEHGIPHDEQHIVFSDSRADSKSDDGWHRRI 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1584g00001 66 Gene3D - 3 61 - -
Trme1584g00001 66 Pfam Ubiquitin family 6 51 IPR000626 GO:0005515
Trme1584g00001 66 ProSiteProfiles Ubiquitin domain profile. 4 50 IPR000626 GO:0005515
Trme1584g00001 66 SUPERFAMILY Ubiquitin-like 3 51 IPR029071 -
Trme1584g00001 66 PRINTS Ubiquitin signature 15 35 IPR019956 -
Trme1584g00001 66 PRINTS Ubiquitin signature 36 56 IPR019956 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1584g00001 4 50 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 48.936 1.97e-08 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1584g00001 - K13821 tva:TVAG_2v0993500 43.1282