Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme158468g00001 GGCGTAGCCATTGCCAAAGACATGGCGGATATAATCTTACTAGAAAAAGATCTCAATGTGCTCGTCGCAGGTGTTGAACATGGTCGTCTCACCTTCGGCAACACAATGAAGTATATAAAGATGTCAGTTATTGCTAACTTGGGAAGTACCATTTCACTCCTCATAGCAACATTGTTCCTTAAATACGAGCCTTTGACTTCTCGACAGCTTCTTACACAGAATTTCATCTACAGCCTCGGACAAATCGTTATCCCTTGGGATAAAATCGATGAAGAATATTTGAAAACTCCTCATAAGTGGTCGGAACGAGGCTTACCTATGTTCATATTATGGAATGGTCCACTTGGTTCATTGAGGGTCTTCTCATGCAAACTCTCATTGTTCATTTGA 390 0.4103 GVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYIKMSVIANLGSTISLLIATLFLKYEPLTSRQLLTQNFIYSLGQIVIPWDKIDEEYLKTPHKWSERGLPMFILWNGPLGSLRVFSCKLSLFI 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme158468g00001 129 Gene3D - 2 16 IPR023214 -
Trme158468g00001 129 PRINTS Magnesium-transporting ATPase signature 55 66 IPR006415 GO:0015444|GO:0015693|GO:0016020
Trme158468g00001 129 PRINTS Magnesium-transporting ATPase signature 37 52 IPR006415 GO:0015444|GO:0015693|GO:0016020
Trme158468g00001 129 PRINTS Magnesium-transporting ATPase signature 87 100 IPR006415 GO:0015444|GO:0015693|GO:0016020
Trme158468g00001 129 PRINTS Magnesium-transporting ATPase signature 107 123 IPR006415 GO:0015444|GO:0015693|GO:0016020
Trme158468g00001 129 PANTHER CATION TRANSPORTING ATPASE 2 102 - -
Trme158468g00001 129 SUPERFAMILY Calcium ATPase, transmembrane domain M 28 115 IPR023298 -
Trme158468g00001 129 Gene3D - 17 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme158468g00001 Trme-Chr158468 1 481 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme158468g00001 1 102 Primary Pumps ATPases(2) AT1G10130 28.846 1.16e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme158468g00001 K01531 - pvu:PHAVU_002G260400g 204.912