Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme158437g00001 ATGTTCGGTACTGGAATTGCAGATGTTAGCTTCAAACAATCTTTGCCACGTTATGTTCGTGCACCTGCTGTTTTCAAGTGCCATAGAGTTTCTGCTATTGGCAATGGTGAAGATGAACTTGCTTATTTGGCGACAGTGAATATTAGTGGTCATGTCTTCAAAGGGTTTCTTTATGATCAAGGTATTGATGCAAAAAATGAAACAATGCCTTGTGTTTCAGAACTTCAACTTGGAAGTAATGGCAGTGGAAAGAGTTATAAGGAATGTTCTTCTGCAATTGAGGTTCCAACTAGTGCATATCCTGCATCTG 310 0.3935 MFGTGIADVSFKQSLPRYVRAPAVFKCHRVSAIGNGEDELAYLATVNISGHVFKGFLYDQGIDAKNETMPCVSELQLGSNGSGKSYKECSSAIEVPTSAYPAS 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme158437g00001 103 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 6 88 IPR007818 GO:0003700|GO:0006355
Trme158437g00001 103 Pfam Domain of unknown function (DUF702) 11 63 - -
Trme158437g00001 103 NCBIfam LRP1 C-terminal domain 15 62 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme158437g00001 Trme-Chr158437 1 310 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme158437g00001 12 96 C2H2 Transcription Factor Family AT5G12330 49.412 1.03e-20 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Trme158437g00001 DUF702 6.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme158437g00001 - - gmx:100790311 151.369