Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme158085g00001 ATGGCTGCTGCGAGGACAATAAAAGACGATTTGCTGCGAGGAAGCTTCGATATGGACTTGGAGACAACCGAGGGTGTGAAGACTTTTCAAAGTTTCGAGGAGATGGGAATCAAAGACAATTTACTCCGTGGAATCTACCAATACGGTTTCGACAAACCATCCGCGATTCAACAGCGTGCTATTGCGCCTATCATTCAAGGTCGCGATGTCATTGCTCAAGCTCAATCTGGAACTGGCAAGACTTCCATGATTGCTCTAACTGTTTGCCATCTTGTCGATACTTCCGTCAAAGAGTGA 297 0.4613 MAAARTIKDDLLRGSFDMDLETTEGVKTFQSFEEMGIKDNLLRGIYQYGFDKPSAIQQRAIAPIIQGRDVIAQAQSGTGKTSMIALTVCHLVDTSVKE 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme158085g00001 98 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 93 IPR027417 -
Trme158085g00001 98 Pfam DEAD/DEAH box helicase 55 92 IPR011545 GO:0003676|GO:0005524
Trme158085g00001 98 Gene3D - 3 98 IPR027417 -
Trme158085g00001 98 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 30 58 IPR014014 GO:0003724
Trme158085g00001 98 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 27 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme158085g00001 Trme-Chr158085 5 301 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme158085g00001 20 98 Eukaryotic Initiation Factors Gene Family AT3G19760 70.886 4.67e-37 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme158085g00001 K13025 - gmx:100800020 134.035