Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1579g00001 ATGAAAAAGTTTGAGGATTTAGATAATGGTAATTTGAATGAAATTCTTACAAGGCATGTTTCTTCAAATCATGATGAAGATGTGATGATGCCTTGGTTGAATTATGCAATGGATGAGCACTCTTTACAACATGACTATAATTATAGTTTCTTACATGAACTTTCTGGTGTCAACACAAATGACTTTCCTGCCTCAAATATATTTTCTTTGCTTGATAGAGGAAGTAATTGTATTCAAGTATTTAGTGACTCTCATAAACAAGGGATTCTTTGCAAAGGTTCTTCAGTTGCAGCTGAAGAATTTGAGACATTTGGACTAAAAAATAGCACTAATCAGTTATACACGGCGTCACGGTTGCATCAATGTCAACCATCACTTGAAAATGATTCAAAAAGTAATGCAAACCAGCATGAACCTTGTGAAGAAATCTCGCCTATTCCGTCTTCATCAAACATAATGAATTTCACCCATTTTGCAAAACCTGTTGCTATTGTGAAGGCTAATCTTCACAACATTGGTTTGTCTTCATCGAGATCAGAAAATTTAGGAATAAAGAACAAAGATGAAGCTGCAAAAGATATCAGTCCTTTTGAATCAACAAAAGTTGATTTAAGTGGAGATTGTCCAAGAAATTCTGCCATACACTGTCATCATGCTGTGGAGCCATCCAGGGTTGATTTGAAATCTTTGGAGCCGAAATCTCTTGAGCAAAATGCTGGTGTTTCTACGCCTGCTTGCAAAGAAGATGTGTTCAAGGTTGAGCAAACTTCTAATCAAGTTCTTGGTGAGAGTGGCAGAAAAGGTCAAGAAGCTGTTGAAAAATGTATTGAGCAAACAGTAGTCACTTCCTCTGTTTGCTCTGATAATGGCGCATATAGAGGTTCAGATGACACAAATAAAAATTTGAAGCGAAAAAATCTAGACTCTGAGGATTCTGAGTGGAATAGTGAAGATGTTGAGGATGAATCAATTGATGTTAAAAGGACAGCTCATGGACGAGGAGGTATCAGCTCAAAGAGAAACCGTTCAGCTGAAGTGCACAATCTATCTGAAAGGAGACGAAGAGACAGGATCAATGAGAGGATGCGTGCATTGCAAGATCTCATACCGAATTGCAATAAGGCAGATAAAGCTTCAATGCTGGATAAGGCAATTGAGTATCTTAAAACGCTTCAACTCCAACTGCAAATTATGTCAATGGGAGGTGGTGGTTTATACATGCCTATGATGTTACCTCCAGGAATGCAACACATGCATGCAACACACATGTCTCCCTTTTACCCGATGAATATTGGCATGCAAATGGGGTTGGGGGTGCCTCAATTTCAAGGAACTCACCTTCCTGTTGNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNCTAGACCAAATCATCAAATGTTTGGGAAAAACCTCGGAACTCATCTACCAATGCCATATGCTCCAATGTTTTCTTATCCTGGAGAGTCTGTTATGAACTCATCAGCTGTAGGATTAAATCCCAGTGGAACAGCAGGACTACTGGAAACCGTGGAGTCAGTTTCAACACCTAAGTTAATGGATCCAATGCCAAATGTGGACTCACAAGTTATGCAAAACAACAATGGATGCAACTCAATAAATCAAATGTCTATCCAG 1641 0.379 MKKFEDLDNGNLNEILTRHVSSNHDEDVMMPWLNYAMDEHSLQHDYNYSFLHELSGVNTNDFPASNIFSLLDRGSNCIQVFSDSHKQGILCKGSSVAAEEFETFGLKNSTNQLYTASRLHQCQPSLENDSKSNANQHEPCEEISPIPSSSNIMNFTHFAKPVAIVKANLHNIGLSSSRSENLGIKNKDEAAKDISPFESTKVDLSGDCPRNSAIHCHHAVEPSRVDLKSLEPKSLEQNAGVSTPACKEDVFKVEQTSNQVLGESGRKGQEAVEKCIEQTVVTSSVCSDNGAYRGSDDTNKNLKRKNLDSEDSEWNSEDVEDESIDVKRTAHGRGGISSKRNRSAEVHNLSERRRRDRINERMRALQDLIPNCNKADKASMLDKAIEYLKTLQLQLQIMSMGGGGLYMPMMLPPGMQHMHATHMSPFYPMNIGMQMGLGVPQFQGTHLPVXXXXXXXXXXXXXRPNHQMFGKNLGTHLPMPYAPMFSYPGESVMNSSAVGLNPSGTAGLLETVESVSTPKLMDPMPNVDSQVMQNNNGCNSINQMSIQ 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1579g00001 547 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 391 IPR011598 GO:0046983
Trme1579g00001 547 MobiDBLite consensus disorder prediction 328 355 - -
Trme1579g00001 547 Pfam Helix-loop-helix DNA-binding domain 346 392 IPR011598 GO:0046983
Trme1579g00001 547 SMART finulus 348 397 IPR011598 GO:0046983
Trme1579g00001 547 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 339 410 IPR036638 GO:0046983
Trme1579g00001 547 CDD bHLH_AtPIF_like 342 403 IPR047265 -
Trme1579g00001 547 Gene3D - 337 399 IPR036638 GO:0046983
Trme1579g00001 547 MobiDBLite consensus disorder prediction 514 547 - -
Trme1579g00001 547 MobiDBLite consensus disorder prediction 338 355 - -
Trme1579g00001 547 MobiDBLite consensus disorder prediction 124 145 - -
Trme1579g00001 547 MobiDBLite consensus disorder prediction 527 547 - -
Trme1579g00001 547 FunFam Basic helix-loop-helix transcription factor 337 400 - -
Trme1579g00001 547 PANTHER TRANSCRIPTION FACTOR PIF3 13 545 IPR044273 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1579g00001 Trme-Chr1579 416 2867 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1579g00001 26 417 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 35.366 5.13e-48 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme1579g00001 HLH 3.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1579g00001 K12126 - gmx:100794974 498.819