Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1576g00001 ATGGGCGGAGCTGCCATCACAATTGCTCTTCAACAGCTTAAGGGTTTCCTTGGGATTGAAAAGTTCACAAGGAAAACCGATATAATCTCTGTGATGCATTCAGTATTCTCATCAGCCCATCATGGATGGAACTGGCAAACTATATTAATTGGATCTACCTTTCTTTCTTTTCTTCTGTTTGCCAAGTATATCGGAAAGAAGGGCCAGAAATTCTTCTGGGTGCCAGCAATTGCTCCATTGATATCTGTTGTACTCTCCACTTTGTTTGTATACATAACCCGTGCAGACAAACACGGTGTTGCGATTGTAAAACACATAGAGAAAGGGATAAATCCATCCTCCGTGAAGGAAATTTATTTTACTGGTGACTACCTTGCGAAAGGTGTTAGAATTGGCATTGTGGCTGGCATGATAGCTTTAACTGAAGCCATAGCAATTGGAAGAACATTTGCGTCTATGAAGGACTATCAACTGGATGGAAACAAAGAAATGGTGGCATTAGGAGCTATGAATGTTGTTGGTTCAATGACTTCCTGTTATGTAGCAACTGGTTCTTTCTCTCGGTCAGCAGTAAATTTCATGGCTGGCTGCGAAACTGCGGTCTCTAATATTGTCATGTCTGTTGTTGTGTTCTTAACCTTGCAATTTATCACGCCTCTTTTCAAATACACTCCAAATGCCATTCTTGCTTCAATCATCATTTGTGCCGTCATCAACCTTGTAGACTATAAGGCAGCAATTTTGATATGGAAAATTGATAAATTTGACTTTGTTGCTTGCATGGGAGCATTTTTCGGGGTCGTTTTTGCCTCGGTTGAGATAGGACTTTTGATTGCTGTTTCTATATCCTTTGCAAAAATCCTATTGCAAGTCACGAGACCCCGAACTGCTATTCTGGGGAAGATCCCTAGGACAACTGTTTATAGAAACATCCAGCAATATCCAGAGGCAACAAGGGTTCCTGGTGTACTGATTATAAGAGTTGATTCTGCAATATATTTTTCCAACTCCAATTATGTTAAAGAAAGGATACTAAGATGGCTTATGGATGAGGAAGAACGAGTGAATAGAGACTACCAAACCCGGATCCAATTTTTGATAGTTGAGATGTCACCTGTTACTGACATTGATACTAGTGGCATCCATGCCCTGGAAGAGTTATTTAGAAGTCTTCAGAAGAGAGAGGTTCAG 1191 0.4047 MGGAAITIALQQLKGFLGIEKFTRKTDIISVMHSVFSSAHHGWNWQTILIGSTFLSFLLFAKYIGKKGQKFFWVPAIAPLISVVLSTLFVYITRADKHGVAIVKHIEKGINPSSVKEIYFTGDYLAKGVRIGIVAGMIALTEAIAIGRTFASMKDYQLDGNKEMVALGAMNVVGSMTSCYVATGSFSRSAVNFMAGCETAVSNIVMSVVVFLTLQFITPLFKYTPNAILASIIICAVINLVDYKAAILIWKIDKFDFVACMGAFFGVVFASVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVYRNIQQYPEATRVPGVLIIRVDSAIYFSNSNYVKERILRWLMDEEERVNRDYQTRIQFLIVEMSPVTDIDTSGIHALEELFRSLQKREVQ 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1576g00001 397 Gene3D STAS domain 293 397 IPR036513 -
Trme1576g00001 397 PANTHER SULFATE TRANSPORTER 1 396 IPR001902 GO:0016020|GO:0055085
Trme1576g00001 397 FunFam Sulfate transporter 31 293 397 - -
Trme1576g00001 397 SUPERFAMILY SpoIIaa-like 315 396 IPR036513 -
Trme1576g00001 397 NCBIfam sulfate permease 1 397 IPR001902 GO:0016020|GO:0055085
Trme1576g00001 397 CDD STAS_SulP_like_sulfate_transporter 314 397 - -
Trme1576g00001 397 Pfam STAS domain 314 397 IPR002645 -
Trme1576g00001 397 ProSiteProfiles STAS domain profile. 313 397 IPR002645 -
Trme1576g00001 397 Pfam Sulfate permease family 1 261 IPR011547 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1576g00001 Trme-Chr1576 501 2890 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1576g00001 1 397 Inorganic Solute Cotransporters AT1G22150 80.101 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1576g00001 K17470 - gmx:100797668 725.317