Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme157647g00001 ATGGTTATGGAATACATGGAACATGATCTTAAAGGACTAATGGAGGCAATGAGACAACCATTTAGNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTGTTAGAAGGTGTGAAGTATCTTCACGACAACTGGGTGCTTCACAGGGATTTGAAGACTTCAAACCTGCTTCTGAATAATAAGGGTGAGTTAAAAATTTGCGATTTCGGATTAGCTCGTCAGTATGGGAGTCCATTGAAACCATATACATCATTGGTGGTTACTCTTTGGTACAG 272 0.3493 MVMEYMEHDLKGLMEAMRQPFXXXXXXXXXXXXLEGVKYLHDNWVLHRDLKTSNLLLNNKGELKICDFGLARQYGSPLKPYTSLVVTLWY 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme157647g00001 90 PANTHER CELL DIVISION PROTEIN KINASE 1 90 - -
Trme157647g00001 90 SUPERFAMILY Protein kinase-like (PK-like) 1 90 IPR011009 -
Trme157647g00001 90 ProSitePatterns Serine/Threonine protein kinases active-site signature. 45 57 IPR008271 GO:0004672|GO:0006468
Trme157647g00001 90 Gene3D Transferase(Phosphotransferase) domain 1 6 90 - -
Trme157647g00001 90 Pfam Protein kinase domain 1 90 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme157647g00001 90 ProSiteProfiles Protein kinase domain profile. 1 90 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme157647g00001 Trme-Chr157647 134 405 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme157647g00001 1 90 Core Cell Cycle Gene Families AT5G10270 47.253 9.94e-20 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Trme157647g00001 Pkinase 2.4e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme157647g00001 K08818 - gmx:100812800 155.606