Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15748g00001 CTTGTTCAAGGATGGGCTGCCATAATAATGGGCGTACTATCAGGAAGTGTACCATGGTACACAATGATGGTACTTGGAAAAAAGTTTGCAATATTTCAAAAGGTTGACGACACCCTCGCCGTGTTCCACACTCACGCCGTGGCTGGCCTTCTAGGCGGTGTACTAACCGGCCTATTCGCCGAACCAACCCTAAGTACTCTCTTTCTCCCCGTCACCAATTCCAAAGGAGGTGTCTATGGAGGCTCCGGCGGAGTCCAAATCCTYAAACAAATAGTTGGAGCTTTATTCATYATTGGATGGAACATTGTTGCCACTTCAATTATTTGTWTAGTTGTAGGTTTAATTGTTCCTTTGMGAATGACTGARGAAGAATTGYTTATTGGAGATGATGCGGTTCATGGGGAAGAAGCTTATGCTTTGTGGGGTGATGGTGAGAAACTTAGCCTCTACAAAGATGATACTACAAGTCATGGAGTTTTGGCATCAAGTGGTGCCACTCAAATTGTCTAG 510 0.4412 LVQGWAAIIMGVLSGSVPWYTMMVLGKKFAIFQKVDDTLAVFHTHAVAGLLGGVLTGLFAEPTLSTLFLPVTNSKGGVYGGSGGVQILKQIVGALFIIGWNIVATSIICJVVGLIVPLRMTEEELXIGDDAVHGEEAYALWGDGEKLSLYKDDTTSHGVLASSGATQIV 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15748g00001 169 PANTHER AMMONIUM TRANSPORTER MEP2 1 147 IPR001905 GO:0008519|GO:0016020|GO:0072488
Trme15748g00001 169 Gene3D Ammonium transporter AmtB like domains 1 141 IPR029020 -
Trme15748g00001 169 Pfam Ammonium Transporter Family 2 138 IPR024041 GO:0008519|GO:0016020|GO:0072488
Trme15748g00001 169 SUPERFAMILY Ammonium transporter 2 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15748g00001 Trme-Chr15748 506 1015 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15748g00001 1 157 Inorganic Solute Cotransporters AT2G38290 62.420 8.01e-67 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15748g00001 K03320 - gmx:100785993 286.189