Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme157256g00001 CTCTTTATCTTCTTTGTTCAGCCGTTCAAGAGGTTCGTTGAGATCGGGAGAGTTGCACTTGTCAACTACGGCGAGGATTATGGAAAGCTCGTTGTCATCGTTGATGTCATCGACCAAACTAGGGCTCTTGTTGATGCACCTGACATGGAGAGAGTTCCAATTAATTTCAAGAGGCTTTCTCTAACTGATATCAAGATTGATATCAAAAGAGTCCCTAAGAAGAAGGATCTCATTAAGGCCATGGAAGAAGCTGATGTGAAGAACAAGTGGGAGAAGAGTTCATGGGGAAGGAAATTGATTGTTAGGAAGAGGAGGGCAGCACTTACTGATTT 332 0.4307 LFIFFVQPFKRFVEIGRVALVNYGEDYGKLVVIVDVIDQTRALVDAPDMERVPINFKRLSLTDIKIDIKRVPKKKDLIKAMEEADVKNKWEKSSWGRKLIVRKRRAALTD 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme157256g00001 110 SUPERFAMILY Translation proteins SH3-like domain 11 99 IPR008991 -
Trme157256g00001 110 FunFam 60S ribosomal protein L14-1 7 90 - -
Trme157256g00001 110 Gene3D - 7 90 IPR014722 -
Trme157256g00001 110 Pfam Ribosomal protein L14 51 110 IPR002784 GO:0003735|GO:0005840|GO:0006412
Trme157256g00001 110 PANTHER 60S RIBOSOMAL PROTEIN L14 8 110 IPR039660 GO:0003723|GO:0003735
Trme157256g00001 110 CDD KOW_RPL14 13 85 IPR041985 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme157256g00001 Trme-Chr157256 2 528 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme157256g00001 9 110 Cytoplasmic Ribosomal Protein Gene Family AT2G20450 87.255 7.67e-60 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme157256g00001 K02875 - jre:108991213 182.57