Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme157239g00001 ATGAGCCCACACATTCTTGAAATCCCTGAAGGCAGCGATGTTGTTGAAGCAATAGCCCGGTTCAGTAACCGAAGAAAAACCAGTTTATGTGTATTAACCGGTTCAGGTACCGTCTCTAACGTTACACTCCGTCAAATATCTGCTCCTNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTTCTCCCCGTCGGAACCCTCACCGCCGATCCAAAAAGAATTCTCGATCTCTCTCGCCGGACCTCAGGGTCAGATCGTCGGAGGGTTTGTCGTTGGACGGTTGCTTGCCGTCGGTCCGGTGTTTGTGATTGCCGCTTCTTTTAACAATCCATCTTATCATAGGTTGCCTTTGGAAGAGGATGTTATGAATAACTCAGTCTCCGGTGGTGGTGGTG 421 0.4228 MSPHILEIPEGSDVVEAIARFSNRRKTSLCVLTGSGTVSNVTLRQISAPXXXXXXXXXXXXXXXXXXXXFSPSEPSPPIQKEFSISLAGPQGQIVGGFVVGRLLAVGPVFVIAASFNNPSYHRLPLEEDVMNNSVSGGGG 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme157239g00001 140 CDD DUF296 3 116 IPR005175 -
Trme157239g00001 140 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 133 IPR014476 GO:0003680
Trme157239g00001 140 SUPERFAMILY AF0104/ALDC/Ptd012-like 1 128 - -
Trme157239g00001 140 Gene3D - 3 134 - -
Trme157239g00001 140 Pfam Plants and Prokaryotes Conserved (PCC) domain 3 118 IPR005175 -
Trme157239g00001 140 ProSiteProfiles PPC domain profile profile. 1 137 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme157239g00001 Trme-Chr157239 1 421 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme157239g00001 1 137 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 51.773 5.87e-42 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme157239g00001 - - cam:101500910 190.274