Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15717g00001 ATGTATGGTATGGACATGCAGGTTAGGAAAGAGAAGTTAGGGGACCGTATCACAGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACGGATACAGCATCTGTTCTTCATGAAGCCATTGAGTACATCAAGTTCCTTCATGATCAAGTTAATGTTTTGAGCACTCCATATATGAAAAATGGATCTCCCATTCAACACCAACAGGGTTGCGATAATGTACCGAAGGAGTCAGAAGGAAAAAAACAAGATTTAAGAAGTCAAGGGCTTTGTTTGGTGCCGATTTCAAGCACATTTCCGATGGCTAATGAAACTCCAGTTGATTTTTGGATGCCTACATTTGGAGGCCCACTCTTTGGCCGATAG 363 0.4215 MYGMDMQVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLSTPYMKNGSPIQHQQGCDNVPKESEGKKQDLRSQGLCLVPISSTFPMANETPVDFWMPTFGGPLFGR 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15717g00001 120 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 8 65 IPR036638 GO:0046983
Trme15717g00001 120 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 98 - -
Trme15717g00001 120 MobiDBLite consensus disorder prediction 63 84 - -
Trme15717g00001 120 CDD bHLH_AtbHLH_like 7 54 IPR045239 -
Trme15717g00001 120 FunFam Transcription factor bHLH123 family 7 69 - -
Trme15717g00001 120 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 46 IPR011598 GO:0046983
Trme15717g00001 120 Gene3D - 7 68 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15717g00001 Trme-Chr15717 2 874 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15717g00001 9 115 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 69.159 6.31e-48 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15717g00001 - - vvo:131624453 207.608