Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme157050g00001 CACCCTGGCCAGATTGGAAACGGTTATGCCCCTGTTCTTGACTGCCACACCTCCCACATTGCCGTCAAGTTTGCTGAGCTTGTTACCAAGATCGATAGGCGTTCTGGTAAGGAAATTGAGAAGGAGCCCAAATTCTTGAAGAATGGTGATGCTGGTATCATTAAGATGGTTCCCACNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNGAGTCATCAAGGCTGTGGAGAAGAAGGAACCCAGCGGAGGACCTAAGCCCAAGAAGAAGTGA 324 0.3642 HPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGIIKMVPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIKAVEKKEPSGGPKPKKK 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme157050g00001 107 Coils Coil 89 96 - -
Trme157050g00001 107 PANTHER ELONGATION FACTOR 1 ALPHA 1 66 - -
Trme157050g00001 107 Pfam Elongation factor Tu C-terminal domain 2 59 IPR004160 -
Trme157050g00001 107 Gene3D Translation factors 1 65 - -
Trme157050g00001 107 FunFam Elongation factor 1-alpha 1 65 - -
Trme157050g00001 107 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 1 60 IPR009001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme157050g00001 Trme-Chr157050 2 325 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme157050g00001 1 101 Eukaryotic Initiation Factors Gene Family AT1G07930 60.396 8.06e-36 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme157050g00001 K03231 - aew:130796613 121.324