Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15703g00001 ATGATTGAGGAACTACATGATCCATGGGTTAAGAGATTGTTTGTGGGGTTTGCACGTACGTCTGATTGTAATGGGCCTAGAAAGCCAGATGGTTCTCATCATTTAATTCAAGAGATCGACTCTGAACAACCTGTTTGTAAACCTGCTCTTCAGTTAACGCACAGTATTTTTGGGTCTTCTCCACCTATGCGAAATTTTGATCCAGCAAAATTGCTTACTGACTCTGGGAAGCTTCAAACACTTGATATATTATTGAAACGTTTACGAGCAGGAAATCACCGTGTTCTCTTGTTTGCTCAGATGACCAAGATGCTGAATATTTTGGAGGACTATATGAACTATAGAAAATATAAGTATTTTAGACTTGATGGATCAACATCTATTCAGGACCGCAGAGACATGGTCAGAGACTTTCAGCATAGGCCTGATGTTTTCGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATTAACTTGACAGCTGCTGACACGGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGATCTACAGGCAATGGATAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTCTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTCAGAGCTAGTCAGAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGAGGTGATCTTTTAGCTCCTGAGGATGTGGTATCTTTGCTTCTGGATGATGTTCAGTTGCAACAGAAATTTCAAAATATAACTGTCCAG 777 0.4015 MIEELHDPWVKRLFVGFARTSDCNGPRKPDGSHHLIQEIDSEQPVCKPALQLTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSTSIQDRRDMVRDFQHRPDVFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKFQNITVQ 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15703g00001 259 SMART helicmild6 106 189 IPR001650 -
Trme15703g00001 259 Gene3D - 26 254 IPR027417 -
Trme15703g00001 259 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 80 230 IPR001650 -
Trme15703g00001 259 Pfam Helicase conserved C-terminal domain 80 189 IPR001650 -
Trme15703g00001 259 PANTHER HELICASE SRCAP-RELATED 32 255 - -
Trme15703g00001 259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 247 IPR027417 -
Trme15703g00001 259 CDD SF2_C_SNF 68 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15703g00001 Trme-Chr15703 125 1438 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15703g00001 44 209 RAD5 or RAD16-like Gene Family AT5G22750 35.542 1.07e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15703g00001 K11665 - gmx:100780615 469.544