Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme156850g00001 ATGGAGTCCGATCTTCATCAAGTCATCAAAGCTAATGATGACTTGACTCGTGAACACCAACAGTTTTTTCTTTATCAGATGCTTCGTGCATTGAAGTTTATGCATACAGCAAATGTATATCACAGAGATCTTAAGCCCAAGAATATACTGGCGAATGCAAACTGCAAACTCAAAGTCTGTGATTTTGGACTGGCAAGAGTTGCATTCAATGATACCCCAACAACAACTTTTTGGACG 237 0.3924 MESDLHQVIKANDDLTREHQQFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKVCDFGLARVAFNDTPTTTFWT 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme156850g00001 79 Gene3D Transferase(Phosphotransferase) domain 1 3 72 - -
Trme156850g00001 79 Pfam Protein kinase domain 3 77 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme156850g00001 79 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 73 - -
Trme156850g00001 79 ProSiteProfiles Protein kinase domain profile. 1 79 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme156850g00001 79 FunFam Mitogen-activated protein kinase 1 79 - -
Trme156850g00001 79 SUPERFAMILY Protein kinase-like (PK-like) 2 76 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme156850g00001 Trme-Chr156850 13 355 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme156850g00001 1 79 MAP Kinase Gene Family AT1G53510 97.468 1.05e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Trme156850g00001 Pkinase 7.3e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme156850g00001 - - ath:AT1G53510 164.466