Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme156800g00001 ATGAGCGGGGGACATAAATTTGTCAAGAAACTTCTCATAGACAATGGAGCAAACATATTCTTTACTGATGTAGCGCGTTTAGCATGCGTTGCAGCTCAGAAAAATAACACTGAATTGCTCATGGAACTCATAGAATTTGGTGTGGATGTGACAAAATCCGATAAAAATGGAACCACTGCCCTGCATACAGCAGTAAGTGAAGGAAATGTAGAGATTGTGAAGCTACTTGTAGACCTAGGAGCTGAAGTTGATAAGC 256 0.4062 MSGGHKFVKKLLIDNGANIFFTDVARLACVAAQKNNTELLMELIEFGVDVTKSDKNGTTALHTAVSEGNVEIVKLLVDLGAEVDK 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme156800g00001 85 Gene3D - 1 85 IPR036770 -
Trme156800g00001 85 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 3 84 - -
Trme156800g00001 85 ProSiteProfiles Ankyrin repeat region circular profile. 56 85 - -
Trme156800g00001 85 SMART ANK_2a 23 52 IPR002110 GO:0005515
Trme156800g00001 85 SMART ANK_2a 56 85 IPR002110 GO:0005515
Trme156800g00001 85 Pfam Ankyrin repeats (3 copies) 4 84 IPR002110 GO:0005515
Trme156800g00001 85 Coils Coil 83 85 - -
Trme156800g00001 85 ProSiteProfiles Ankyrin repeat profile. 56 85 IPR002110 GO:0005515
Trme156800g00001 85 SUPERFAMILY Ankyrin repeat 4 84 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme156800g00001 Trme-Chr156800 1 256 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme156800g00001 3 85 Ion Channels AT4G32500 48.193 1.89e-21 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme156800g00001 K21867 - gmx:100808832 103.219