Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15671g00001 TCACTTGGGCAGGCAGCACCAGACATTTCTGCATTTATCAGGGCAAAGACGGCAGCTTATCCCATTTTTGAGATGATAGAGAGAGACACAGTTAGCAAAAATAGCTCAAAAAGTTGTCGAAAATTAAAAAAAATAGATGGTCACATACAATTTATTAATGTCTGTTTCACTTACCCATCTCGTCCTGATGTTGCTATTTTCAACAATCTTTGTCTTGAGATTCCTTCAGATAGGAATGATATAAAAGAACTTGATCTAAAATGGCTTAGACATCAAATTGGACTAGTTAATCAAGAGCCTGCACTTTTTGCTACAAGCATAAGGGAGAACATATTGTATGGTAAAAATGATGCCACTCCTGAAGAACTAAACCGTGCTTTGGAACTTTCTAATGCTCACTCTTTCATCAACAATCTTCCTGATGGATTAGATACTCAGCAGCGTCAAGGTCTTTGA 456 0.3728 SLGQAAPDISAFIRAKTAAYPIFEMIERDTVSKNSSKSCRKLKKIDGHIQFINVCFTYPSRPDVAIFNNLCLEIPSDRNDIKELDLKWLRHQIGLVNQEPALFATSIRENILYGKNDATPEELNRALELSNAHSFINNLPDGLDTQQRQGL 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15671g00001 151 Gene3D - 39 75 IPR027417 -
Trme15671g00001 151 Gene3D - 76 146 IPR027417 -
Trme15671g00001 151 PANTHER ABC TRANSPORTER B FAMILY 1 76 IPR039421 -
Trme15671g00001 151 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 146 IPR027417 -
Trme15671g00001 151 Gene3D ABC transporter type 1, transmembrane domain 1 38 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15671g00001 Trme-Chr15671 811 1470 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15671g00001 1 146 Calmodulin-binding Proteins AT2G36910 43.889 2.59e-38 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15671g00001 K05658 - gmx:100819045 232.646