Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme156628g00001 ATGGTGATGGGACCTAATGGAAAGGTAATTCATTTGGGTCCAGTAGATGGAGATGCAATTAGATTGGTTACTGCTTCAAAAATTTGGATTGATCATAATACACTTTATAAATGTGAAGATGGTCTTCTTGATGTCACAAGAGGTTCAACTAATGTCACTATATCCAATAATTGGTTTAGAGAACAAGATAAGGTTATGCTTCTTGGTCATGATGATGGCTATGTGAGAGACAAGAACATGAAGGTTACCGTTTTGTACAATCATTTTGGACCTAACTGCAACCAACGGATGCCCAGGATTCGCCATGGATATGCACATGTAGCCAACAATCTTTACTTAGGATGGATGCAATATGCTATTGGTGGAA 367 0.3815 MVMGPNGKVIHLGPVDGDAIRLVTASKIWIDHNTLYKCEDGLLDVTRGSTNVTISNNWFREQDKVMLLGHDDGYVRDKNMKVTVLYNHFGPNCNQRMPRIRHGYAHVANNLYLGWMQYAIGG 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme156628g00001 122 Pfam Pectate lyase 15 120 IPR002022 -
Trme156628g00001 122 SUPERFAMILY Pectin lyase-like 13 122 IPR011050 -
Trme156628g00001 122 PANTHER PECTATE LYASE 18-RELATED 1 122 IPR045032 GO:0030570
Trme156628g00001 122 Gene3D - 5 122 IPR012334 -
Trme156628g00001 122 PRINTS Pollen allergen Amb family signature 96 115 IPR018082 -
Trme156628g00001 122 PRINTS Pollen allergen Amb family signature 16 37 IPR018082 -
Trme156628g00001 122 PRINTS Pollen allergen Amb family signature 118 122 IPR018082 -
Trme156628g00001 122 SMART amb_all 2 122 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme156628g00001 Trme-Chr156628 23 503 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme156628g00001 2 122 Polysaccharide Lyase AT5G09280 81.818 1.98e-74 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme156628g00001 K01728 - gmx:100780437 242.276