Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1562g00001 GTGTTCCATTTCATTTATACATATGCTGTAGTTGTTGATGTTTGTCCCTTCACTCTAGATGAGTTTGTTCAGGCATTTCATGATAAGGACTCAATGTTACTTGGAAAGATTCACGTGGCCCTTCTCACACTGCTTCTATCTGACATTGAAGTGGAGTTTTCTAATGGGTTTTGTCCTCATTTAAATAAGTCATGCAACTTTCTTGCGCTGCTTCACTCTGTTGAAAATCAAGAATATTCCCTTGACGTTTGGAGAATATCTCTAAACCCTCTTACTTGGATTGAAATACTCCGTCAAGTGCTGGTAGCCGCTGGATTCGATTCCAAGCAAGGTGCCTTCCGAAGAGAGGGCCTTGGCAAGTGTGAGTTGTTTAAAATCTTGTCTGAACGAGGTAACAATGGGTGCAAAGTTTCTGAGCTGGCAAAGTCATTGCAGATTGCGGAATTAAACCTTGCCAACACAACAGAGGAACTAGAGTCTTCAATATATTCCACACTTTCAAGTGATATTACTTTATTTGAAAAGATTTCATCGTCTGCATATCGATTGCGCATGAGCACTGTTTCAAAGGACAATGATGATTCTGAGTCAGATACAGAGGATTCTGGGAGTGTTGATGATGAGCTTAACGACTCTGATGCATGTAGCAGTGGAGATGATTTTGAAAGCGGTTCAATAAACTCTAATATAAGAAAATTAAAGCCTGATAATAATCGTAAAGTTAAACATAATAGGCTGAAAGTTTACACTAAAATTGATGAGAGTCGTGCAGGAGAAGTGTGGTTGTTGGGACTGATGGATAGTGAATACTCAGATTTGAAAATTGAAGAAAAATTGAATGCATTGGCAGCGTTAACCGGTCTTCTTTCATCTGGATCCAGCATCAGGATGAAGATGATCCTGGCCACAGGAGGGTTTACTTTGAATCCTCTGAAGACGGCCACTGGGAGGTGA 954 0.4025 VFHFIYTYAVVVDVCPFTLDEFVQAFHDKDSMLLGKIHVALLTLLLSDIEVEFSNGFCPHLNKSCNFLALLHSVENQEYSLDVWRISLNPLTWIEILRQVLVAAGFDSKQGAFRREGLGKCELFKILSERGNNGCKVSELAKSLQIAELNLANTTEELESSIYSTLSSDITLFEKISSSAYRLRMSTVSKDNDDSESDTEDSGSVDDELNDSDACSSGDDFESGSINSNIRKLKPDNNRKVKHNRLKVYTKIDESRAGEVWLLGLMDSEYSDLKIEEKLNALAALTGLLSSGSSIRMKMILATGGFTLNPLKTATGR 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1562g00001 317 ProSiteProfiles DDT domain profile. 1 51 IPR018501 -
Trme1562g00001 317 Coils Coil 137 157 - -
Trme1562g00001 317 MobiDBLite consensus disorder prediction 216 232 - -
Trme1562g00001 317 MobiDBLite consensus disorder prediction 194 215 - -
Trme1562g00001 317 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 120 197 IPR044977 GO:0006357
Trme1562g00001 317 Pfam DDT domain 1 48 IPR018501 -
Trme1562g00001 317 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 257 299 IPR028942 -
Trme1562g00001 317 MobiDBLite consensus disorder prediction 187 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1562g00001 Trme-Chr1562 202 2901 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1562g00001 1 296 Homeobox Transcription Factor Family AT1G28420 28.744 3.24e-36 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Trme1562g00001 DDT 2.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1562g00001 - - mtr:112417546 497.664