Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15623g00001 ATGCGGTTTACTCGGTTTTCGGGCGGAAAAAATAGGGTGAAGAGAAGTGTGAGAGTACCGGCGATAAGTTCAAAGACGGCCGATATACCGGCAGACGAGTACTCATGGCGAAAATACGGTCAAAAACCAATCAAGGGTTCACCATATCCGCGCGGCTATTACAAGTGTAGCACTGTGAGAGGGTGCCCAGCAAGGAAACACGTGGAGCGTGCACCAGATGATCCAACGATGCTGATTGTAACATATGAAGGGGAACACAGACACGCAATTCAAGCCGCGATGCAGGAGAATGCAGCCGGGATTGTGGGTTTG 312 0.5064 MRFTRFSGGKNRVKRSVRVPAISSKTADIPADEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAPDDPTMLIVTYEGEHRHAIQAAMQENAAGIVGL 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15623g00001 104 FunFam WRKY transcription factor 65 14 91 - -
Trme15623g00001 104 SUPERFAMILY WRKY DNA-binding domain 26 90 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme15623g00001 104 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 10 94 IPR044810 GO:0003700
Trme15623g00001 104 Pfam WRKY DNA -binding domain 32 88 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme15623g00001 104 Pfam Plant zinc cluster domain 10 28 IPR018872 -
Trme15623g00001 104 Gene3D WRKY domain 14 90 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme15623g00001 104 SMART WRKY_cls 30 90 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme15623g00001 104 ProSiteProfiles WRKY domain profile. 25 91 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15623g00001 Trme-Chr15623 347 1029 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15623g00001 10 104 WRKY Transcription Factor Family AT2G24570 78.125 2.39e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme15623g00001 WRKY 7.1e-27 CL0274