Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme156109g00001 GATTTTGTTGGCATTGGCATTGAGTTTGATCCGGATATTTTGAAGGTTCGTCATGAATCTGTAATTAGTGCCTTATATGGTAAGCTTCCTAGACAGTGCAAAACTTGTGGCCTACGATTCAAATCACAAGATGAGCACAGCAGTCACATGGATTGGCATGTGACTAAGAACCGTAACCNNNNNNNNTNNNNNNNNNNCCGTAAGCAGAAACCCTCTCGCAAGTGGTTTGTCAGTGAGACGATGTGGCTTAGTGGTGCAAAGGAATTGGGAACTGAATCAGCTCCAGCTCCAAGTTTTTTGCCAACCGAAGAAAAGAAAGACGACGAAGAGTTGTCAGTTCCTGCTGAAGAGGACCAGAAAACATGCTCTCTATGCGGAGAGCATTTCGATCAGTTTTACAGTGACGAGACAGAGGATTGGATGTACAGAGGAGCTGTTTACCTTAATG 448 0.4263 DFVGIGIEFDPDILKVRHESVISALYGKLPRQCKTCGLRFKSQDEHSSHMDWHVTKNRNXXXXXXXRKQKPSRKWFVSETMWLSGAKELGTESAPAPSFLPTEEKKDDEELSVPAEEDQKTCSLCGEHFDQFYSDETEDWMYRGAVYLN 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme156109g00001 149 MobiDBLite consensus disorder prediction 101 117 - -
Trme156109g00001 149 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 5 149 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Trme156109g00001 149 ProSitePatterns Zinc finger C2H2 type domain signature. 33 53 IPR013087 -
Trme156109g00001 149 MobiDBLite consensus disorder prediction 87 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme156109g00001 Trme-Chr156109 1 448 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme156109g00001 5 149 C2H2 Transcription Factor Family AT4G04885 67.568 3.52e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme156109g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme156109g00001 K14400 - tpra:123896642 282.337