Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15601g00001 ATGCTGGATAAGGATCGGGTGGAAAATTCACATTGTGCATCTTGTCCACCTAGCACTAGAAATGATGGTGGAGTCGACAAATCCTCAAGCATTAGTACATGTTTGGCAAAGCCAATATTCAATAACATGAACTTTTTTAAGAAAAAGGTAAAGAAAGACCTATGTTCTGCCTCGAGCTGCGCTACTAGTAGTTTCGACAAGGGGAATGGAAATTCTGATCTTAAGCATGAAGAGAAAGAAAATGATAAACAATCTCCGTGCAGTTCGAATCATAGCATTGAAGTTAACTCAGTTAATGTTAGTAGAGATTCAAGTAAACCTAGTTCTAGTTTGAATTGCAATAAGAAAACTAAGTTTCTTGTTACAAAAGTTGATGAAAAATCGAGATCAAAGGAAAAAGGTGAATTCTCGCAGAGCTCAAAAAGTAGCATGGGTGAGTATAGTACTAGTAGCACAAGCATCAGTGAGGAGAGCAATCTTAGCAGTTCGAATCGCAGTGGACAACGACCACACATGTCAAAGCACTCGAGATGGGAAGCTATTCGAGCAGTTCAACAGCAGCATGGTAACTTAAATTTGAGGCATTTCAGGATGCGAAGGAAGATCGGTAGTGGAGACATNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNCATTGAAAGTTATGGACAATGAATTTTTGGCTAGCAGGAAGAAAACATTTAGGGTCCAAACTGAAAGAGAGATCCTTCAAATGCTGGATCATCCATTTCTTCCTACACTTTATTCGTATATCAATACGGATAAGCTCTCTTGCTTGGTCATGGAGTATTGTCCAGGCGGTGATCTGCATGTGCTGCGACAGAGGCAAACATACAAGAGCTTTTCGGAGCAAGCATCTAGGTTTTATGTTGCTGAAGTTCTTCTCGCCCTTGAGTATTTGCACATGATGGGAGT 950 0.3832 MLDKDRVENSHCASCPPSTRNDGGVDKSSSISTCLAKPIFNNMNFFKKKVKKDLCSASSCATSSFDKGNGNSDLKHEEKENDKQSPCSSNHSIEVNSVNVSRDSSKPSSSLNCNKKTKFLVTKVDEKSRSKEKGEFSQSSKSSMGEYSTSSTSISEESNLSSSNRSGQRPHMSKHSRWEAIRAVQQQHGNLNLRHFRMRRKIGSGDXXXXXXXXXXXXXXXXXLKVMDNEFLASRKKTFRVQTEREILQMLDHPFLPTLYSYINTDKLSCLVMEYCPGGDLHVLRQRQTYKSFSEQASRFYVAEVLLALEYLHMMGV 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15601g00001 317 Pfam Protein kinase domain 198 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme15601g00001 317 MobiDBLite consensus disorder prediction 1 27 - -
Trme15601g00001 317 Coils Coil 224 230 - -
Trme15601g00001 317 MobiDBLite consensus disorder prediction 86 112 - -
Trme15601g00001 317 MobiDBLite consensus disorder prediction 66 112 - -
Trme15601g00001 317 Gene3D Transferase(Phosphotransferase) domain 1 280 317 - -
Trme15601g00001 317 SUPERFAMILY Protein kinase-like (PK-like) 169 317 IPR011009 -
Trme15601g00001 317 Gene3D Phosphorylase Kinase; domain 1 194 279 - -
Trme15601g00001 317 MobiDBLite consensus disorder prediction 12 27 - -
Trme15601g00001 317 PANTHER FLIPPASE KINASE 1-RELATED 72 317 - -
Trme15601g00001 317 MobiDBLite consensus disorder prediction 70 85 - -
Trme15601g00001 317 ProSiteProfiles Protein kinase domain profile. 196 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme15601g00001 317 MobiDBLite consensus disorder prediction 137 169 - -
Trme15601g00001 317 MobiDBLite consensus disorder prediction 124 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15601g00001 Trme-Chr15601 1 1432 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15601g00001 76 317 AGC Kinase Gene Family AT3G52890 52.066 4.39e-73 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trme15601g00001 Pkinase 2.2e-16 CL0016