Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15588g00001 CTTCAAGACATGACACTGATGATCCTTGGAGTGTGTGCTATTGTGTCACTGATAGTAGGCGTGTTAACCGAAGGATGGCCAAAAGGAGCTCATGATGGTCTTGGAATAGTTGCAAGTATCTTACTTGTTGTCTTTGTGACAGCAACAAGTGATTATCGACAATCGTTACAGTTTAAGGATTTAGACAAGGAGAAGAAAAAGATTTCCATTCAAGTTACGAGAAACGGTTATAGACAGAAAATGTCGATATACAATTTACTTCCTGGTGATATTGTCCATCTTAACATTGGAGACCAAGTGCCTGCAGATGGATTATTTGTTTCAGGATTTTCGGTGTTGATCGATGAGTCGAGTTTAACAGGTGAGAGTGAGCCAATAATGGTGACTTCACAAAATCCATTTCTTCTCTCAGGAACAAAAGTCCAAGATGGATCATGCACCATGTTGATTACCACTGTTGGGATGAGGACTCAATGGGTTTTGGTTAAAGGACACTTGGGCCGCAAAATCCGCGAAGGAAGATTCTGGAGATGGTCTGGTGATGATGCAATGGAGATGTTGGAATACTTCGCTATTGCGGTTACTATTGTTGTCGTTGCGGTTCCAGAGGGGTTACCATTAGCTGTGACATTGAGTCTTGCATTCGCAATGAAGAAGATGATGAATGATAAAGCCTTGGTTAGGCATTTAGCAGCTTGTGAAACTATGGGATCAGCCACAACTATATGTAGTGACAAGACCGGTACACTAACAACCAACCGAATGACGGTTGTGAAAACATGCATTTGTATGAATAGCAAAGAAGTGAACAATAATGATTCAAGTTTGTCGTCCGAACTACCAGATTCTGCTACAAAACTGTTGCTACAGTCGATATTTAATAACACGGGAGGAGAGGTTGTGCATAACAGAAAAGGTAAACGCGAGATATTAGGGACGCCGACCGAATCAGCAATATTGGAATTTGGGTTGTCACTAGGTGGTGATTCTAAGGCTGAGAGAAAAGCTTGCAAAATTGTTAAAGTTGAGCCGTTCAACTCTGAGAAGAAAAGAATGGGAGTAGTTGTGGAGCTACCAGATGGAGGTTTAAGAGCTCATTGCAAAGGTGCTTCTGAAATAATTCTTGCTGCTTGTGACAAAGTTATTGGCTCAAACGGCGATGTTGTTGCTCTTGATGGAGAATCGATTAATTATCTTAACAGTATTATTAACCAGTTTGCTAATGAAGCACTTAGAACTCTTTGCCTTGCCTATATGGAAAT 1262 0.4089 LQDMTLMILGVCAIVSLIVGVLTEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYNLLPGDIVHLNIGDQVPADGLFVSGFSVLIDESSLTGESEPIMVTSQNPFLLSGTKVQDGSCTMLITTVGMRTQWVLVKGHLGRKIREGRFWRWSGDDAMEMLEYFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMNSKEVNNNDSSLSSELPDSATKLLLQSIFNNTGGEVVHNRKGKREILGTPTESAILEFGLSLGGDSKAERKACKIVKVEPFNSEKKRMGVVVELPDGGLRAHCKGASEIILAACDKVIGSNGDVVALDGESINYLNSIINQFANEALRTLCLAYME 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15588g00001 420 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 249 419 IPR023299 GO:0000166
Trme15588g00001 420 Gene3D - 142 268 - -
Trme15588g00001 420 Pfam Cation transport ATPase (P-type) 302 381 - -
Trme15588g00001 420 FunFam Calcium-transporting ATPase 253 420 - -
Trme15588g00001 420 PANTHER CATION TRANSPORTING ATPASE 175 419 - -
Trme15588g00001 420 FunFam Calcium-transporting ATPase 47 167 - -
Trme15588g00001 420 Gene3D - 294 420 IPR023299 GO:0000166
Trme15588g00001 420 SUPERFAMILY Calcium ATPase, transduction domain A 70 159 IPR008250 -
Trme15588g00001 420 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 237 IPR023298 -
Trme15588g00001 420 NCBIfam HAD-IC family P-type ATPase 184 276 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme15588g00001 420 Gene3D - 46 141 - -
Trme15588g00001 420 ProSitePatterns E1-E2 ATPases phosphorylation site. 245 251 IPR018303 -
Trme15588g00001 420 PRINTS P-type cation-transporting ATPase superfamily signature 115 129 - -
Trme15588g00001 420 PRINTS P-type cation-transporting ATPase superfamily signature 243 257 - -
Trme15588g00001 420 Pfam E1-E2 ATPase 68 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15588g00001 Trme-Chr15588 102 1486 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15588g00001 1 420 Primary Pumps ATPases AT4G37640 74.026 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15588g00001 K01537 - gmx:100776926 729.169