Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme155857g00001 AAGGATCACGACGAGTTCATTGATGAATCATTGAACGGGGAATTTCCCTCTTGGGTAACAAGTAAGGATAGAAGGCTTTTGGAGTCTTCAGTTGGGGACGTAAAAGCCAATGTTGTCGTGGCTAAGGACGGGAGCGGCAAGTTCAAGACTGTGGTTGAGGCTGTGGCATCTGCACCAGACAACGGTAAGACAAGGTATGTCATCTATGTGAAAAGGGGAATCTACAAAGAGAAAGTAGATATCGGTAGTAAAAAGACGAATGTGATGCTTGTGGGTGATGGTATGGATGCAACGATAATCACAGGAAGCTTAAATGTCATCGATGGAACGGGAACCTTCCAAAGTGCAACAGTTGCTGCTGTTGGCGATGGGTTTATAGCGCAGGACATTGGGTTCCAAAACACTGCAGGCCCACAGAAGCATCAGGCAGTTGCTCTCCGCGTC 444 0.473 KDHDEFIDESLNGEFPSWVTSKDRRLLESSVGDVKANVVVAKDGSGKFKTVVEAVASAPDNGKTRYVIYVKRGIYKEKVDIGSKKTNVMLVGDGMDATIITGSLNVIDGTGTFQSATVAAVGDGFIAQDIGFQNTAGPQKHQAVALRV 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme155857g00001 148 PANTHER PECTINESTERASE 17 148 - -
Trme155857g00001 148 Pfam Pectinesterase 37 148 IPR000070 GO:0030599|GO:0042545
Trme155857g00001 148 ProSitePatterns Pectinesterase signature 1. 62 81 IPR018040 -
Trme155857g00001 148 Gene3D - 31 148 IPR012334 -
Trme155857g00001 148 SUPERFAMILY Pectin lyase-like 35 148 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme155857g00001 Trme-Chr155857 2 532 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme155857g00001 11 148 Carbohydrate Esterase AT1G11580 75.000 8.21e-68 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme155857g00001 K01051 - gmx:100815836 248.054