Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15576g00001 GAGAAGAACAAGAAAAATAAAAGCATCAAGTTTGATGTCCTTTTGACATCGTATGAGATGATAAACCTTGATGCTGCGGCATTGAATCCTATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAACAAGGATTCAAAATTGTTTTCTTCGTTGAAGCTTTTCTCTAGCAGACATCGCGTGCTTTTGACAGGAACTCCTCTTCAGAACAATCTGGATGAACTCTTTATGCTTATGCACTTCCTTGATGCTGGGAAGTTTGGTATTTTAGAGGAGTTCCAAGAAGAGTTTAAGGATATCAATCAAGAACAACAGATTTCGAGGCTTCATAAACTGTTGGCTCCACATCTCCTGCGAAGTATACATCTATTTCTTGAATAA 390 0.3846 EKNKKNKSIKFDVLLTSYEMINLDAAALNPIKWECMIVDEGHRLKNKDSKLFSSLKLFSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGILEEFQEEFKDINQEQQISRLHKLLAPHLLRSIHLFLE 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15576g00001 129 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 88 IPR014001 -
Trme15576g00001 129 Pfam SNF2-related domain 3 125 IPR000330 GO:0005524|GO:0140658
Trme15576g00001 129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 122 IPR027417 -
Trme15576g00001 129 Gene3D - 1 126 IPR038718 -
Trme15576g00001 129 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 3 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15576g00001 Trme-Chr15576 2 1115 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15576g00001 19 84 RAD5 or RAD16-like Gene Family AT1G02670 37.879 2.11e-11 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme15576g00001 SNF2_N 8.1e-31 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15576g00001 K11643 - gmx:100804203 203.756