Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme155673g00001 ATGGGAAGAAGACATATGTTAGGACCTCCTGGAACCCTAAATACTATAACACCTTGTGCAGCATGTAAGCTTTTAAGAAGAAGATGTGCTCAAGAATGTCCTTTCTCTCCCTATTTCTCTCCTCATGAACCTCAAAAGTTTGCTTCTGTTCACAAAGTTTTTGGTGCCAGCAATGTCTCCAAGATGCTAATGATTATTATCAGTGTCGACGTGTCAGTATCCGTGTCGTGTCCGATGTCCGTGTCTGTGTCTGATGTCCGTGTATATGCTTCATAG 276 0.4239 MGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMIIISVDVSVSVSCPMSVSVSDVRVYAS 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme155673g00001 91 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 64 - -
Trme155673g00001 91 Pfam Lateral organ boundaries (LOB) domain 18 64 IPR004883 -
Trme155673g00001 91 ProSiteProfiles LOB domain profile. 17 91 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme155673g00001 Trme-Chr155673 36 517 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme155673g00001 3 66 AS2 family AT2G40470 92.188 9.83e-40 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme155673g00001 LOB 2.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme155673g00001 - - qsu:112036590 140.198