Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme155301g00001 GGGAGAATTGAAAGAGGGACCGTTAAAGTTGGTGATGTAGTTGACCTTGTTGGTTTGAGGAACACAAGGAGCACAACAGTGACAGGAGTGGAAATGTTCCAAAAGATTTTGGATGATGCTATGGCCGGCGACAATGTGGGGTTGTTGCTGAGAGGTGTTCAGAAGGATGATATTGAGAGAGGAATGGTTTTGGCTAAGCCTGGAACTATTACTCCCCACTCTAAGTTTAGTGCTATTGTGTATGTTTTAAAGAAGGAAGAAGGTGGAAGACACTCACCTTTCTTTGCTGGTTATAGGCCTCAGTTTTATATGAGAACTACCGATGTTACCGGAAAAGTTACTTCTATTATGAATGATAAAGATGAGGAGTCAAAGATGGTGATGCCCGGTGATCGTGTTAAGATGGTGGTTGAGCTAATTGTTCCCGTGGCTATTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGGAAGACTGTTGGAGCTGGTGTTATCGGAGCTATCATTGTGTGA 513 0.4308 GRIERGTVKVGDVVDLVGLRNTRSTTVTGVEMFQKILDDAMAGDNVGLLLRGVQKDDIERGMVLAKPGTITPHSKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVAIEQGMRFAIREGGKTVGAGVIGAIIV 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme155301g00001 170 Gene3D Translation factors 1 105 - -
Trme155301g00001 170 FunFam Elongation factor Tu 1 105 - -
Trme155301g00001 170 Pfam Elongation factor Tu domain 2 1 64 IPR004161 GO:0005525
Trme155301g00001 170 Gene3D Translation factors 109 169 - -
Trme155301g00001 170 SUPERFAMILY Translation proteins 1 72 IPR009000 -
Trme155301g00001 170 PANTHER ELONGATION FACTOR TU-RELATED 1 169 - -
Trme155301g00001 170 Pfam Elongation factor Tu C-terminal domain 69 168 IPR004160 -
Trme155301g00001 170 FunFam Elongation factor Tu 109 169 - -
Trme155301g00001 170 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 69 167 IPR009001 -
Trme155301g00001 170 CDD EFTU_III 71 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme155301g00001 Trme-Chr155301 1 513 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme155301g00001 1 168 Eukaryotic Initiation Factors Gene Family AT5G60390 27.957 1.66e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme155301g00001 K02358 - qsa:O6P43_030823 308.145