Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme155215g00001 ATGCAGAGCTTCAAATCAAGGGAATATGTTAGGGAAACTTTTGCTTGGATGCACTATTACTGGTTCCTTACCAATGATGGAATTGAGTTCCTCAGGACTTACCTCAATCTTCCATCTGAGATTGTGCCAGCTACNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGGTGATCGCCCTAGGGGTCCACCTCGATTCGAGGGAGAAAGGAGATTCGGTGGTGACCGTGATGGATATCGTGGAGGTCCTAGAGGACCTGGTGGTGAGTTTGGTGGAGAAAAGGGTGGAGCTCCAGCTGACTATAGACCTTCTTTCGGG 327 0.4281 MQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATXXXXXXXXXXXXXXGDRPRGPPRFEGERRFGGDRDGYRGGPRGPGGEFGGEKGGAPADYRPSFG 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme155215g00001 109 PANTHER 40S RIBOSOMAL PROTEIN S10 1 108 IPR037447 -
Trme155215g00001 109 MobiDBLite consensus disorder prediction 51 109 - -
Trme155215g00001 109 Pfam Plectin/S10 domain 1 46 IPR005326 -
Trme155215g00001 109 MobiDBLite consensus disorder prediction 65 81 - -
Trme155215g00001 109 Gene3D - 1 55 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme155215g00001 Trme-Chr155215 77 495 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme155215g00001 1 108 Cytoplasmic Ribosomal Protein Gene Family AT5G52650 70.000 4.31e-37 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme155215g00001 K02947 - cit:102627721 109.383