Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15520g00001 AGTGACCGTGAATTAGTGAATAAAATTGTTGAGGCCATTTTGCCAAAACTAGACAACAGTACCTTGCCTATAACTGAATTTCCAGTTGGGTTAGAATCCCATGTGAAGCAAGTGGTTGGGTTGATTGAGAAACAAGCGGGCAATTTTTGTATAGTAGGGATCTGGGGAATGGGAGGATCAGGCAAAACAACTGTAGCCAAAGCTGTCTACAATGAAATTCATCGTAGATTTGATTGTACAAGTTTCATCGAAAATATAAGAGAAGTTTGTGAACAGGATACTAGAGGGCATATGCATTTACAACAACAACTTCTTTCAGATGTCCTCAAAACAAAGGAGAAGATACATAGCATTGCGTTGGGGACAACTAGGATCCAAAAAGTGGTTTCTGGAAAAAAAGCACTCGTGGTACTTGATGATGTGACCGATTTTCAGCAAATAAAAGTCCTATGTGGGAATAATAAATGTTTTGGTTCTGGAAGTGTATTAATTGTTACAACCAGGGATGTACACATACTTAAGTTACTTAAAGTTGTCTCCGTCTATAAAATGGAGGAAATGCACAAAAACGAGTCCCTTGAGCTATTCTCTTGGCATGCTTTTAGAAAAGCAAGTCCTAAAGGAGGCTTTAGTGAACTCTCAAGAAGTGTGGCTGCTTATTGTGGAGGGTTACCACTGGCTCTTGAAGTCCTTGGATCCTACTTATTTGATAGGACAAAACAAGAATGGACAAGTGTA 738 0.3902 SDRELVNKIVEAILPKLDNSTLPITEFPVGLESHVKQVVGLIEKQAGNFCIVGIWGMGGSGKTTVAKAVYNEIHRRFDCTSFIENIREVCEQDTRGHMHLQQQLLSDVLKTKEKIHSIALGTTRIQKVVSGKKALVVLDDVTDFQQIKVLCGNNKCFGSGSVLIVTTRDVHILKLLKVVSVYKMEEMHKNESLELFSWHAFRKASPKGGFSELSRSVAAYCGGLPLALEVLGSYLFDRTKQEWTSV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15520g00001 246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 245 IPR027417 -
Trme15520g00001 246 PRINTS Disease resistance protein signature 128 142 - -
Trme15520g00001 246 PRINTS Disease resistance protein signature 51 66 - -
Trme15520g00001 246 PRINTS Disease resistance protein signature 221 235 - -
Trme15520g00001 246 Pfam NB-ARC domain 32 245 IPR002182 GO:0043531
Trme15520g00001 246 Gene3D - 10 181 IPR027417 -
Trme15520g00001 246 Gene3D - 186 246 IPR042197 -
Trme15520g00001 246 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4 245 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15520g00001 Trme-Chr15520 751 1488 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15520g00001 29 240 WRKY Transcription Factor Family AT5G45050 31.132 1.44e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15520g00001 - - gmx:100815297 332.413