Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme155143g00001 CAAGCACCTGAAGGTCACCGTCTCTGCGCAAACAACTGTGGTTTCCTCGGTAGTCCGGCAACCATGAATCTCTGTTCAAAATGCTACGGTGATATTCGTATAAAGGAACAACAAGATGCTTCAACAAAATCCACAATYGAAAACGCTCTCTCGTCGTCCTCTTCTTCCGCCTCTTCCGCCGTCGCATCGATYGCTTCTCCGTCKCTTTCTACATCCGAGCCGATCGTTGTTTCCGTCGAATCAATTAACCCGACGCCAGCTTTKACAGAGATCGCAACGAGTTCTATAACCGYCGGTTCGGTTGGTTCGTTTGGTTCGGTTCAACCGAACCGGTGCGTGACGTGTAGAAAGCGCGTGGGGTTGACCGGGTTTAAGTGTAGATGCGGGTCTACGTTTTGTGGGTCCCACAGGTATCCAGAGAGACACGGCTGTAGCTTTGATTTTAAGACGGTGGGGAGAGAGGAAATAGCTCGAGCGAATCCTTTGATTAGAGCGGAGAAGCTTCAGAGGATTTGA 516 0.4981 QAPEGHRLCANNCGFLGSPATMNLCSKCYGDIRIKEQQDASTKSTIENALSSSSSSASSAVASIASPSLSTSEPIVVSVESINPTPAXTEIATSSITXGSVGSFGSVQPNRCVTCRKRVGLTGFKCRCGSTFCGSHRYPERHGCSFDFKTVGREEIARANPLIRAEKLQRI 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme155143g00001 171 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 8 53 - -
Trme155143g00001 171 Pfam AN1-like Zinc finger 114 148 IPR000058 GO:0008270
Trme155143g00001 171 SMART AN1_Zf_4 112 149 IPR000058 GO:0008270
Trme155143g00001 171 ProSiteProfiles Zinc finger A20-type profile. 3 37 IPR002653 GO:0003677|GO:0008270
Trme155143g00001 171 Pfam A20-like zinc finger 7 29 IPR002653 GO:0003677|GO:0008270
Trme155143g00001 171 ProSiteProfiles Zinc finger AN1-type profile. 106 152 IPR000058 GO:0008270
Trme155143g00001 171 PANTHER AN1-TYPE ZINC FINGER PROTEIN 6 171 - -
Trme155143g00001 171 FunFam Zinc finger AN1-type containing 6 92 167 - -
Trme155143g00001 171 SUPERFAMILY AN1-like Zinc finger 108 166 IPR035896 -
Trme155143g00001 171 Gene3D - 99 167 IPR035896 -
Trme155143g00001 171 Gene3D - 1 66 - -
Trme155143g00001 171 SMART A20_3 6 30 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme155143g00001 Trme-Chr155143 2 517 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme155143g00001 1 171 C2H2 Transcription Factor Family AT3G52800 53.073 1.68e-50 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme155143g00001 - - lang:109347531 225.328