Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme154994g00001 ACTACTGCATCTGTTGCAAAATCCTCCGGGAGCAAGATGGATGATGACCATCAATATGAAAATGGTAGGCATAAGGTGGAATACTACAGAGGAGCACATTCCCCGTGGAATACAGATCCCCAGCATCAAATAAAGGAACAAAATGCCCTAGTTATGAATAAAAAAATTAGGTCCATTATGGCTGAAAGGCAGGCTGCCCTTCTGGAACTTGAACTAGAGGCTGCTATATCTGAAAAGAATGAAGCCTTGGCTGCTCGAGATGCAGCCCTTCGGCAGAGGGATGAAGCACTTGCTCAGAGGGATAATGCTCTATTGGAACGGGATAATGCCCTTGCAGCCCTTCAAAGTCGGAGTGGTGCTTCCAACTTTCCATTCAATGGTGGAATTCAACGAGGATCAAAGCGGATGCACCATTCTTCAAACCATATATCCAACATG 438 0.4543 TTASVAKSSGSKMDDDHQYENGRHKVEYYRGAHSPWNTDPQHQIKEQNALVMNKKIRSIMAERQAALLELELEAAISEKNEALAARDAALRQRDEALAQRDNALLERDNALAALQSRSGASNFPFNGGIQRGSKRMHHSSNHISNM 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme154994g00001 146 SMART GAGA_bind_2 13 146 IPR010409 -
Trme154994g00001 146 MobiDBLite consensus disorder prediction 1 22 - -
Trme154994g00001 146 Pfam GAGA binding protein-like family 13 118 IPR010409 -
Trme154994g00001 146 Coils Coil 65 106 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme154994g00001 13 128 BBR or BPC Transcription factor family AT2G21240 59.829 1.15e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Trme154994g00001 GAGA_bind 5.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme154994g00001 - - gmx:100813103 214.542