Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme154883g00001 ATCCTTCTTGCTGCTAGGGCTGCTAGGACTGAAAATCAGGATGCTATAGATTCTGCTATCGTTGGAATGCTTGCTGACCCTAAAGAGGCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNGTTGATAAGAGAACTGCTTTGACTTATATTGATAATGATGGAAATTGGCATAGAGCTAGCAAAGGTGCTCCTGAACAGATCATGAACTTGTGTAACCTTAGGGAAGATGCTAAGAAGAAGGTTCATGGTATTATTGAAAAGTTTGCCGAAAGAGGACTACGATCACTCGGAGTTGCTAGACAGGTTTTTG 322 0.3634 ILLAARAARTENQDAIDSAIVGMLADPKEAXXXXXXXXXXXXXXVDKRTALTYIDNDGNWHRASKGAPEQIMNLCNLREDAKKKVHGIIEKFAERGLRSLGVARQVF 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme154883g00001 107 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 10 105 IPR023299 GO:0000166
Trme154883g00001 107 PANTHER CALCIUM-TRANSPORTING ATPASE 2 105 - -
Trme154883g00001 107 Gene3D - 1 107 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme154883g00001 Trme-Chr154883 1 534 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme154883g00001 1 105 Primary Pumps ATPases AT2G24520 72.381 4.99e-48 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme154883g00001 K01535 - gmx:100816905 159.844