Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme154821g00001 ATGTCAGAAATGATGAAGAATCCAAGTGTGAGGGAGAAAGCACAAGCTGAATTAAGACAAACGTTTAGAGGAAAAAAAATAATATATGAATCTGATCTACATGAACTTACTTACTTAAAGTTAGTGATCAAAGAAACATTGAGGTTACATCCGCCGTCTCCTTTATTGGTCCCTAGGGAATGCACTGAATTGACCATCATTGATGGGTATCAAATACCAAAAGGTACTAAAGTCATGATAAATGCATGGGCTATAGCAAGAGATCCTCACCATTGGACTGATGCTGAGATGTTCATCCCAGAGAGGTTTGATGGTAGTTTAATTGATTTCAAAGGGAATAACTTTGAGTATATTCCTTTTGGAGCTGGAAGGAGAATGTGTCCAGGTATATCATTTGGTTTAGCTAGTATTGTTCTTCCACTTGCTCTATTACTCTACCACTTCAATTGGGAACTTCCAAATCAAATGAAACCAGAGGATTTGGATATGACTGAACATTTTGGATTGGCAGTTGGAAGGGAA 522 0.3755 MSEMMKNPSVREKAQAELRQTFRGKKIIYESDLHELTYLKLVIKETLRLHPPSPLLVPRECTELTIIDGYQIPKGTKVMINAWAIARDPHHWTDAEMFIPERFDGSLIDFKGNNFEYIPFGAGRRMCPGISFGLASIVLPLALLLYHFNWELPNQMKPEDLDMTEHFGLAVGRE 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme154821g00001 174 Gene3D Cytochrome P450 1 169 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme154821g00001 174 PRINTS E-class P450 group IV signature 127 145 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme154821g00001 174 PRINTS E-class P450 group IV signature 86 104 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme154821g00001 174 PRINTS E-class P450 group IV signature 36 52 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme154821g00001 174 PRINTS E-class P450 group IV signature 111 127 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme154821g00001 174 PRINTS E-class P450 group IV signature 70 84 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme154821g00001 174 PANTHER OS08G0105600 PROTEIN 1 173 - -
Trme154821g00001 174 Pfam Cytochrome P450 3 168 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme154821g00001 174 PRINTS P450 superfamily signature 118 127 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme154821g00001 174 PRINTS P450 superfamily signature 6 19 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme154821g00001 174 PRINTS P450 superfamily signature 127 138 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme154821g00001 174 PRINTS P450 superfamily signature 41 52 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme154821g00001 174 FunFam Predicted protein 1 174 - -
Trme154821g00001 174 SUPERFAMILY Cytochrome P450 1 169 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme154821g00001 174 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 120 129 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme154821g00001 Trme-Chr154821 13 534 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme154821g00001 1 170 Cytochrome P450 AT5G25180 52.353 3.06e-60 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme154821g00001 - K15472 gmx:100816377 290.426