Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15476g00001 ATGGAGCCAGATTTTGAAGAATTGCAGAAGAGTTTTGCACAAGAAGAGCCTAAACCTGGTAGTACTGCTAGTGCGTCATATGGAGTGCAGGAAAGAGATCAGAAATATATAAAAAAGTGGCATTTGATGTATAAGCATGCAGTGTTAAGTAACACGGGGAAATGTGAATATAAGGTTCCCTTTGTTGAGAAGGACAAAAACGGTAGAGAGGAAGAAGATGCTCTTGCATTTAATGGAGGAAACAACTCTTCTTGTCACAGTTATAGTGAAACAGATTCGGATATGGATGATGAAAAGAAGAATGTAATTGAGCTGGTGCAGAAAGCATTTGATGAAATTCTTCTCCCTGAAGCTGAAAACCTTTCCCCTGATGATCATTCAAAATCAAGAGGCAATGAAACAGATGAGGTACTCTTAGAAAAGAGTGAAGGTAAGATTGAAGAAAGGAATGCCACAACTTTCGCAGAATCTCCTAAAGAATTGCAGAAGATGGAGAGCAAACCAAAAAGCTGGAGCCATCTGAAAAAGGTAATCCTCTTGAAAAGGTTTGTAAAGGCATTAGAGAAGGTCAGAAACATCAACCCAAGAAGACCAAGACAATTGCCTTCTGATGCCAACTTCGAAGCGGAAACAGTTTTGCTTAACCGACAAACAGCCGAAGAGAGGAAAAAATCGGAGGAGTGGATGCTTGACTATGCAATTCAAAAGGTTATTTCTAAACTCGCACCTGTTCAAAGACAAAAAGTGACACTTTTAATAGAAGCTTTTGAAACAATTCGACCATTTCAAGATGCTGACAATGGACCTCGGTCTACTGCGACAGTGGAATCTCAAGAAAATCCGATTCAATCACTTGGTGCTTCCTCAAATCATAGCAAGGAAGAAATAAACGATGGAAGAGATTTTGAGGTAACTGAGAGAGCAAAGAATGACAAGAATATGACTGCATGTGAGAAAAATGATGAAAATGCTACTGTGGAATCAACATCAGCAGATGTAGTCAAGTTTCCTGTTTTCAATGTGGCGATATTGGAGGAGGAAGTAACAACCAAAAGTGAAAATATGGAGCCAGATCATAAAGTGCCGCAGAATATTTTTGTGCAGGAAGAGCCTAAGCATGGTAGTAGTAGTAGTACTACTGGTGTGCCATATGGAGTGAAGGAAGGAGATCAGAAATATATAAAAAAGTGGCATTTGATGTATAAACATGNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNCGTTTGTTGGGAAGGACAAAGAAGGTAGAGCGGAAGATGATATCACGTTCAATGGAGGAAAAAGCTCTTGTCACTATTATAGTGAAACAGATTCTGATATGGATGATGAAAAGAAGAATGTAATTGAGCTTGTGCAAAAAGCATTTGATGAAATTCTTCTCCCTGAAGCTGAAGACCTC 1428 0.3803 MEPDFEELQKSFAQEEPKPGSTASASYGVQERDQKYIKKWHLMYKHAVLSNTGKCEYKVPFVEKDKNGREEEDALAFNGGNNSSCHSYSETDSDMDDEKKNVIELVQKAFDEILLPEAENLSPDDHSKSRGNETDEVLLEKSEGKIEERNATTFAESPKELQKMESKPKSWSHLKKVILLKRFVKALEKVRNINPRRPRQLPSDANFEAETVLLNRQTAEERKKSEEWMLDYAIQKVISKLAPVQRQKVTLLIEAFETIRPFQDADNGPRSTATVESQENPIQSLGASSNHSKEEINDGRDFEVTERAKNDKNMTACEKNDENATVESTSADVVKFPVFNVAILEEEVTTKSENMEPDHKVPQNIFVQEEPKHGSSSSTTGVPYGVKEGDQKYIKKWHLMYKHXXXXXXXXXXXXXXFVGKDKEGRAEDDITFNGGKSSCHYYSETDSDMDDEKKNVIELVQKAFDEILLPEAEDL 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15476g00001 476 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 281 474 IPR044681 GO:0005516
Trme15476g00001 476 MobiDBLite consensus disorder prediction 119 137 - -
Trme15476g00001 476 SMART CaM_binding_2 142 261 IPR012417 GO:0005516
Trme15476g00001 476 MobiDBLite consensus disorder prediction 116 137 - -
Trme15476g00001 476 MobiDBLite consensus disorder prediction 265 292 - -
Trme15476g00001 476 Pfam Plant calmodulin-binding domain 162 259 IPR012417 GO:0005516
Trme15476g00001 476 MobiDBLite consensus disorder prediction 1 28 - -
Trme15476g00001 476 MobiDBLite consensus disorder prediction 262 295 - -
Trme15476g00001 476 MobiDBLite consensus disorder prediction 66 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15476g00001 Trme-Chr15476 1 1428 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15476g00001 38 322 Calmodulin-binding Proteins AT5G04020 32.000 2.55e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15476g00001 - - tpra:123892280 805.438