Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme154477g00001 GCTGTGAAAAGAATTGATGCAGAAGAAAGAGGAGAAAGAGAGTTCAAATCAGAAGTTGCAGCTATAGCTAATGTTCAACATGTGAATCTTGTGAGACTTTTTGGGTATTGTAATTCTTCTAAAGCTCCTAGGGAATCTCAAAGGCGTCCGCGTCGCAGTGGATGCTTGTCGTGGAATTTGAGGTATAAAGTTGCAATTGATGTTGCTAAAGGACTAGCATATCTTCACCACGATTGTAGATCAAGGATCTTACACCTTGATATAAAGCCNGAAAATATACTCTTGGACGAGTGCTTTAGAGCACTTGTTTCCGATTTCGGTCTCTCAAAACTTACCGGTAAAGGCGAAAGCCACTCGGTGTCTGCAATAAGAGGAACAAGAGGGTACATGGCACCTGAATGGCTTTTAGAACAGGGTATTTCAGATAAAACCGATGTATATAGTTATGGAATGGTTTTATTGGAGATTGTTGGAG 475 0.4063 AVKRIDAEERGEREFKSEVAAIANVQHVNLVRLFGYCNSSKAPRESQRRPRRSGCLSWNLRYKVAIDVAKGLAYLHHDCRSRILHLDIKPENILLDECFRALVSDFGLSKLTGKGESHSVSAIRGTRGYMAPEWLLEQGISDKTDVYSYGMVLLEIVG 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme154477g00001 158 Pfam Protein kinase domain 1 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme154477g00001 158 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 157 - -
Trme154477g00001 158 FunFam Os07g0541700 protein 48 126 - -
Trme154477g00001 158 ProSiteProfiles Protein kinase domain profile. 1 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme154477g00001 158 Gene3D Phosphorylase Kinase; domain 1 1 43 - -
Trme154477g00001 158 SMART serkin_6 1 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme154477g00001 158 Gene3D Transferase(Phosphotransferase) domain 1 44 158 - -
Trme154477g00001 158 ProSitePatterns Serine/Threonine protein kinases active-site signature. 83 95 IPR008271 GO:0004672|GO:0006468
Trme154477g00001 158 SUPERFAMILY Protein kinase-like (PK-like) 1 157 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme154477g00001 Trme-Chr154477 1 535 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme154477g00001 1 158 Receptor kinase-like Gene Family AT5G20050 63.128 2.98e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme154477g00001 Pkinase 8.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme154477g00001 - - gmx:100791152 257.299