Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15444g00001 CAGGATGAGAGGAGTTCAGGTGCACAAGATCCGCTGCGGTTGTGGGAAGTTAGAAGAACTCCTGCAGAACATCACAGAATACCAAATTTTCCAGCACAACCACCTAGAAGACAACAATCTTATGTTCAAAATGAGGACATGAGAAGGGGTTTCAATTTCAACCCAACCAGACCCAGACAGATTTTTCAGCATTCACCTTCAAGATCAACATCAACTGAACAAACAAACACACAAGTTCCACAATTGGTAGAAAATTCAAAATCAACTATTTTGAGCAAATTAAGGAAAGTAGTCTATGATCCAACACCGAAGCGGTTAGCTAGAAAAGTGAGCTTATATTATAGAGGAAATGCTGCAAATGATTTGAAAGATAGTGTGAAAGAAAATAAGGAAGATGGTATGATATGTGCTATTTGCTTAGAAGATTTTGAGGCCAAAGAAGAAGTGATGCTTACTACATGCAACCACATGTTTCATGAGGATTGTATTGTTACTTGGTTAACAAGTAAAGGTCAGTGTCCAGTTTGTAGGTTTGTGGTTTTTGAGGGAGTAAAGGGAAACTCTTCATCTTTTAATAGGAATGATATTCCCAATTTGGAACCTAATGATATGATCTCTGGAGAGCTTTTGTCAATTTTGAGGGCCATGGAAGAAGCTTTTCAGTTAGAAAGTGTGAATTAG 681 0.3789 QDERSSGAQDPLRLWEVRRTPAEHHRIPNFPAQPPRRQQSYVQNEDMRRGFNFNPTRPRQIFQHSPSRSTSTEQTNTQVPQLVENSKSTILSKLRKVVYDPTPKRLARKVSLYYRGNAANDLKDSVKENKEDGMICAICLEDFEAKEEVMLTTCNHMFHEDCIVTWLTSKGQCPVCRFVVFEGVKGNSSSFNRNDIPNLEPNDMISGELLSILRAMEEAFQLESVN 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15444g00001 226 SMART ringv_2 135 177 IPR011016 GO:0008270
Trme15444g00001 226 MobiDBLite consensus disorder prediction 1 79 - -
Trme15444g00001 226 Pfam Ring finger domain 136 177 IPR001841 -
Trme15444g00001 226 SUPERFAMILY RING/U-box 128 183 - -
Trme15444g00001 226 MobiDBLite consensus disorder prediction 33 79 - -
Trme15444g00001 226 ProSiteProfiles Zinc finger RING-type profile. 136 177 IPR001841 -
Trme15444g00001 226 FunFam RING/U-box superfamily protein 120 194 - -
Trme15444g00001 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 190 IPR013083 -
Trme15444g00001 226 PANTHER RING FINGER DOMAIN-CONTAINING 56 178 - -
Trme15444g00001 226 SMART ring_2 136 176 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15444g00001 85 220 C3H Transcription Factor Family AT3G58720 48.592 2.72e-38 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15444g00001 - - psat:127107286 370.548