Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme154176g00001 ATGCAAGATACATTTTCATACCGACATATAAGTAGATGGATTCGTGAGCAACTTCCACAAAATCGAGAAGCCCTCATAGAGTCCCTGACATGGGAATCTAATGCTAGGAGGCTAGACCCATTACGAGGCTCACACGGGGTTGCTATCAACATGCATCACCAAATTATTGACTTACAGACCAACATTGCTAACCTCAACCTACATCTTCAAGCAGCCCATGCAACCAACCTACAACTTCAAGCACACAACCAACACCTTCAAGCTGAGAATGCAGCATTGATAGCTGCAGCAAACCAAGCAGCAGCACAAGCCCAAGCTCTTGCAAACAACCAACACATCCAAGATGAGAATGCAGCAAACCAAGCAGCTCAA 372 0.4543 MQDTFSYRHISRWIREQLPQNREALIESLTWESNARRLDPLRGSHGVAINMHHQIIDLQTNIANLNLHLQAAHATNLQLQAHNQHLQAENAALIAAANQAAAQAQALANNQHIQDENAANQAAQ 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme154176g00001 124 Coils Coil 83 103 - -
Trme154176g00001 124 Pfam Lateral organ boundaries (LOB) domain 3 64 IPR004883 -
Trme154176g00001 124 ProSiteProfiles LOB domain profile. 1 69 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme154176g00001 Trme-Chr154176 1 372 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trme154176g00001 LOB 3.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme154176g00001 - K00710 vra:106780610 36.1946