Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme154158g00001 ATGAGTCGTAAGAGAGACAACTCCCACTTTTCCCGCCACGACTTCAAGCGCCGTCGTCCACTACCGGAGCCGGCGGAGGAAGAAAAACCCACCACAAGACCAACGCCGCCGTCTGCAGTGGTCGTCATGGGTCTTCCTCTTGACTGTTCCGTCCTCGATCTCAAGTCTCGTTTCGAGATCTACGGCTCCATCTCCCGCATCCGTATCGACCGTGACGCCGTCGGATACATCACCTACCGGACCAAAGACTCCGCCGACGCCGCCATTGCTGCTGGTCATGATCCTTCGTTTGGACTCACCGTCAATTCTAAAAAGGTTCTTGCTTTTCTTTATTCCCTTTTCAGTTAG 348 0.5431 MSRKRDNSHFSRHDFKRRRPLPEPAEEEKPTTRPTPPSAVVVMGLPLDCSVLDLKSRFEIYGSISRIRIDRDAVGYITYRTKDSADAAIAAGHDPSFGLTVNSKKVLAFLYSLFS 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme154158g00001 115 CDD RRM_SF 40 98 - -
Trme154158g00001 115 Gene3D - 1 106 IPR012677 -
Trme154158g00001 115 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 115 IPR000504 GO:0003723
Trme154158g00001 115 SUPERFAMILY RNA-binding domain, RBD 17 94 IPR035979 GO:0003676
Trme154158g00001 115 MobiDBLite consensus disorder prediction 1 39 - -
Trme154158g00001 115 MobiDBLite consensus disorder prediction 16 30 - -
Trme154158g00001 115 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 91 IPR000504 GO:0003723
Trme154158g00001 115 SMART rrm1_1 39 109 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme154158g00001 Trme-Chr154158 130 477 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme154158g00001 1 106 Homeobox Transcription Factor Family AT1G27050 57.391 1.82e-37 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme154158g00001 - - ccaj:109806897 159.844