Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme154116g00001 ATGAAAGATCCTGTTACTGCTATAACAGGTATAACATATGATAGAGAAAACATTGAACATTGGTTATTCAGAAACAAGAACACAACATGTCCTGTTACAAAACAACCTCTTCCATTAGATTCTGATTTAACACCAAACCATACACTTCGTCGTTTGATTCAATCTTGGTGTACACAAAATGCTTCATTTGGTATTGATAGAATTCCAACACCAAAACCACCANTNNNNNNNNNNTNNNNNNNNNNACTTGTTAAAGAGATGAAAGATTCAAGATTTCAGCTCAAGAGTTTAATGCAGTTGGAATTACTTGCTGCTGAGAATGAAAGAAATAGAAAGTGTTTGTTGGAAAACGGTGTTCCGAAATCGATGATTATGTTCTTAGTTGATTGTTATAAAAAAGGTGAAATTCTTGAAG 415 0.3157 MKDPVTAITGITYDRENIEHWLFRNKNTTCPVTKQPLPLDSDLTPNHTLRRLIQSWCTQNASFGIDRIPTPKPPXXXXXXXXLVKEMKDSRFQLKSLMQLELLAAENERNRKCLLENGVPKSMIMFLVDCYKKGEILE 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme154116g00001 138 SUPERFAMILY RING/U-box 1 65 - -
Trme154116g00001 138 Coils Coil 97 117 - -
Trme154116g00001 138 PANTHER WDSAM1 PROTEIN 1 126 IPR045185 GO:0061630
Trme154116g00001 138 SMART Ubox_2 1 56 IPR003613 GO:0004842|GO:0016567
Trme154116g00001 138 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 63 IPR013083 -
Trme154116g00001 138 ProSiteProfiles U-box domain profile. 1 63 IPR003613 GO:0004842|GO:0016567
Trme154116g00001 138 Pfam U-box domain 1 60 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme154116g00001 Trme-Chr154116 47 461 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme154116g00001 1 121 U-box Gene Family AT3G52450 57.377 6.82e-42 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme154116g00001 - - gmx:100798446 192.971